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AT5G22820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.871
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR24eggNOG:ENOG410ZXAXEMBL:AF439835EMBL:AY149942EMBL:CP002688EnsemblPlants:AT5G22820EnsemblPlants:AT5G22820.1
entrez:832345ExpressionAtlas:Q944A0Gene3D:1.25.10.10GeneID:832345Gramene:AT5G22820.1hmmpanther:PTHR23424hmmpanther:PTHR23424:SF4
HOGENOM:HOG000083616InterPro:IPR011989InterPro:IPR016024PhylomeDB:Q944A0Proteomes:UP000006548RefSeq:NP_568423.1SMR:Q944A0
SUPFAM:SSF48371TAIR:AT5G22820UniGene:At.26625UniProt:Q944A0
Coordinates (TAIR10) chr5:-:7624113..7626943
Molecular Weight (calculated) 54292.50 Da
IEP (calculated) 4.14
GRAVY (calculated) -0.04
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDEATKQR GILEEEEENF TGRREESENE FPSHHPPPPP DELFDISTTV DPSYLISLIR KLLPIDSGSD ERHNDHMNTD NVVQGVVAIS GNGVVETSNG
101: DPESMDIGDN HDESTYEVGE TVSSCPAPGM QDGSSAWEDH GCVLWDLAAS RTHAELMVQN LILEVLHANL MVSKSPRIRE ICLGIIRNLA CHEGLLKHIE
201: STAGIVNTLV GQLFLDDTQC LSEVCRILTT GLSGAGCTSW AHCLESDDIL RHILWIAENT LNPHLIEKSV GLLLGIIEGQ PEVEQLLIPP LMNLGLTSLL
301: INLLSFEMSK LTKERIPERY PVLEIILRAI EALSASDSYS KEICSSKELF QLVCDLMKLQ DKAEVATSCV TTGVLIANML SERVDFIPEV LEDFSFLEGL
401: FSTLPFASDD VEARRALWNV IARLLARVNE SEINTFLLSQ YILVLLSNAD IIEDDFLDTQ LEDSNESRNS FPSQIKSSAR TIAVSTFIFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)