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AT5G22620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphoglycerate/bisphosphoglycerate mutase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G50520.1); Has 12570 Blast hits to 12455 proteins in 2295 species: Archae - 57; Bacteria - 9376; Metazoa - 676; Fungi - 332; Plants - 188; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
Protein Annotations
BioGrid:17600EC:3.1.3.63eggNOG:COG0406eggNOG:ENOG410IUDBEMBL:AB006699EMBL:AY062480EMBL:AY093258
EMBL:CP002688EnsemblPlants:AT5G22620EnsemblPlants:AT5G22620.1EnsemblPlants:AT5G22620.2entrez:832325ExpressionAtlas:Q9FNJ9Gene3D:3.40.50.1240
GeneID:832325Genevisible:Q9FNJ9GO:GO:0009507GO:GO:0009570GO:GO:0047538hmmpanther:PTHR23029hmmpanther:PTHR23029:SF43
HOGENOM:HOG000030005InParanoid:Q9FNJ9IntAct:Q9FNJ9InterPro:IPR001345InterPro:IPR013078InterPro:IPR029033KEGG:ath:AT5G22620
KO:K15634OMA:PAMTHISPaxDb:Q9FNJ9Pfam:PF00300Pfam:Q9FNJ9PhylomeDB:Q9FNJ9PRIDE:Q9FNJ9
PRO:PR:Q9FNJ9PROSITE:PS00175ProteinModelPortal:Q9FNJ9Proteomes:UP000006548RefSeq:NP_001154730.1RefSeq:NP_197654.1scanprosite:PS00175
SMART:SM00855SMR:Q9FNJ9STRING:3702.AT5G22620.1SUPFAM:SSF53254TAIR:AT5G22620UniGene:At.27464UniProt:Q9FNJ9
Coordinates (TAIR10) chr5:-:7517731..7520223
Molecular Weight (calculated) 53117.30 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.27
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLPLTTPI LPSRCLLHKT RRQNSTRRRL LIRSSSSLQD QFTVETTKRV VLVRHGQSTW NEEGRIQGSS DFSVLTKKGE SQAEISRQML IDDSFDVCFT
101: SPLKRSKKTA EIIWGSRESE MIFDYDLREI DLYSFQGLLK KEGKEKFGEA FKQWQEDPAN FIIDGHYPVR ELWSRARSCW PGILAHESKS VLVVAHNAVN
201: QALLATAIGL GTEYFRSLLQ SNCGVSVLDF IPRADGGSPH VCLNRLNQTP NSPLAGGSSG GRKASKQIIL VCHGQGNNED SAVINQAANN DQAMNMLGVI
301: HSQKTAELLL DLRVSSIVCS PKTASIESSG VISRVQEAAG CLGVDNVPHY VKTKQMNELD VESVLRKSNK DNDVIASQLD EEAFSALWNR SEKAWESLLD
401: ELSDEKSNPG EIMVVVGPAM THISLIAQCL NLTKEALGLF HLDAGSISVI DFPDGPSSKG VIRCTNYTAH LGRWSIPITK PA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)