suba logo
AT5G22570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 38
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group III
Computational
Description (TAIR10)
WRKY DNA-binding protein 38 (WRKY38); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 62 (TAIR:AT5G01900.1); Has 3118 Blast hits to 2692 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3102; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:17595eggNOG:ENOG410JVCTeggNOG:ENOG4110613EMBL:AB012244
EMBL:AF442395EMBL:AK118884EMBL:BT005645EMBL:CP002688
EnsemblPlants:AT5G22570EnsemblPlants:AT5G22570.1entrez:832320Gene3D:2.20.25.80
GeneID:832320Genevisible:Q8GWF1GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009863GO:GO:0042742GO:GO:0043565
Gramene:AT5G22570.1hmmpanther:PTHR31282HOGENOM:HOG000154861InParanoid:Q8GWF1
IntAct:Q8GWF1InterPro:IPR003657KEGG:ath:AT5G22570OMA:RKHEQKI
PaxDb:Q8GWF1Pfam:PF03106Pfam:Q8GWF1Pfscan:PS50811
PhylomeDB:Q8GWF1PRO:PR:Q8GWF1PROSITE:PS50811ProteinModelPortal:Q8GWF1
Proteomes:UP000006548RefSeq:NP_197649.2SMART:SM00774SMR:Q8GWF1
STRING:3702.AT5G22570.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT5G22570
tair10-symbols:ATWRKY38tair10-symbols:WRKY38UniGene:At.27347UniGene:At.67241
UniProt:Q8GWF1
Coordinates (TAIR10) chr5:-:7495608..7496707
Molecular Weight (calculated) 33269.80 Da
IEP (calculated) 5.41
GRAVY (calculated) -1.15
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)