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AT5G22450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH9MeggNOG:ENOG41102UKEMBL:CP002688EnsemblPlants:AT5G22450EnsemblPlants:AT5G22450.1entrez:832306GeneID:832306
Gramene:AT5G22450.1hmmpanther:PTHR31115hmmpanther:PTHR31115:SF4InParanoid:F4K9W2iPTMnet:F4K9W2KEGG:ath:AT5G22450OMA:KPNIHED
PaxDb:F4K9W2PRIDE:F4K9W2ProteinModelPortal:F4K9W2Proteomes:UP000006548RefSeq:NP_197637.2TAIR:AT5G22450UniGene:At.20623
UniProt:F4K9W2
Coordinates (TAIR10) chr5:-:7437145..7442856
Molecular Weight (calculated) 126092.00 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.73
Length 1154 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLGSGNNLSR GTIGLSSDTP NLSQVLTLEP IRLGNQNYTR SGELRRVLGV PSRASSEDNS FGMSHPRPSP PVATEELKHF KESVLDTSRE AGDLVKKLSE
0101: NIFKLDKYAE TINSKKRRRN DIPPGERMDA ATFDKVRNQV PRTQDIMAQR SEERKKMLGL NKRARTTVAD VRGDARISAL ARQHVIEKGS DSPPSVSGES
0201: VRIEEKIRRL PVGGEGWETR MKRKRSVATL GNRIMNPEQR VMQPKPTADS KLRSCDSQNF RSKSSPGVSG INRLDTSFEP DSPCMGALSR NELETVSIAR
0301: DRSVLAEQRL AKGNNKRNLL DDSPTNSSTA ILKGKVSRAP RTAAIMGVES SAKVDSPSGV LQGSSAHAMA QWVGQRPHKN SRTRRTNVVS PVIKHSESKI
0401: SGQGFATSDF SPRASPGTTG PLSVVDSSPL KMKRELRNAS SPYGLSESED SGAGDNKTRE RAFASGDLFT TPKSGSLLLP TRKNKIQTSH KGGGAWKQGK
0501: SESVSSLTTP GFHPIMVKSE NLPVEKPFHN IKIASDKNRS KYGRPPAKKV KDRKPATRLA SNANTPSDIT GESDDDREDI FAAANSARKA ANLACSGKFW
0601: KKMDHIFAAV NVDDMQNMKD QLNFAQELDK SLSDAILDGY NILGLKLPKA VHRPGVGNVD YSGPTSSCVS GLSFERLDMR KLNESTPLYK RVLSALIEED
0701: DGEEVVQFNG GKNLSLHYAS DDSHCGSCTY IDTEFRERDR MEFEVESSGD FQTPKSGLFD RFSSERSVVS NPFRNGGMSI SVHSNEQWIG DDDLSHSDAA
0801: LGNETYSNSL GQLQAREVNI PNFPVSDTQY QLMSLDERLL LELQSIGVFP EAMPDLAEET MSTDVMELKE GIYQEILNKK KKLEKLIITI QKGKDVEKRK
0901: IEHLAMDQLV ETAHKKRMAC RGSKAAKVNK VTRQVALGFI RRTVARCRKF EETGFSCFSD PALQDILFSS PSNDAKSSEN GGSGTASNTL NEPSNHQAEA
1001: KGSGAVSSTK RREALIDDVI GCASSKVTTS KGSAVLSGGG AQGKRSERED GFRNKNKPKP KENNNNNNGN QSRSTTTSTH PTGPASRGAS NRGVTSGDGA
1101: VDDEAPIDFS KLAFRDLDEI DEQADLGNWF EGLQDIDTAG LDEVPMDDLS FMFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)