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AT5G22380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 90
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 90 (NAC090); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 61 (TAIR:AT3G44350.2); Has 2731 Blast hits to 2726 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:832299eggNOG:ENOG410IWQ9eggNOG:ENOG410YGJ5EMBL:AB007651EMBL:AY086944EMBL:CP002688EnsemblPlants:AT5G22380
EnsemblPlants:AT5G22380.1entrez:832299ExpressionAtlas:Q9FMR3GeneID:832299Genevisible:Q9FMR3GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT5G22380.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF4HOGENOM:HOG000237406InParanoid:Q9FMR3
InterPro:IPR003441KEGG:ath:AT5G22380OMA:YHAVDETPaxDb:Q9FMR3Pfam:PF02365Pfam:Q9FMR3Pfscan:PS51005
PhylomeDB:Q9FMR3PRIDE:Q9FMR3PRO:PR:Q9FMR3PROSITE:PS51005ProteinModelPortal:Q9FMR3Proteomes:UP000006548RefSeq:NP_197630.1
SMR:Q9FMR3STRING:3702.AT5G22380.1SUPFAM:SSF101941TAIR:AT5G22380tair10-symbols:anac090tair10-symbols:NAC090UniGene:At.43843
UniProt:Q680R1UniProt:Q9FMR3
Coordinates (TAIR10) chr5:-:7408924..7410038
Molecular Weight (calculated) 26723.50 Da
IEP (calculated) 5.77
GRAVY (calculated) -0.56
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEVTIGFR FYPTEEELVS FYLRNQLEGR SDDSMHRVIP VLDVFEVEPS HLPNVAGVRC RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP
101: VFSKDNKMIG AKKTMVFYTG KAPTGRKTKW KMNEYHAVDE TVNASTIPKL RREFSLCRVY ITTGSSRAFD RRPEGVLQTE RMLTSDVAVA ETSFRVESSL
201: ETSISGGEHI DVSMNTEFVD GLSEPMWDWE QLTWP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)