suba logo
AT5G22360.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vesicle-associated membrane protein 714
Curator
Summary (TAIR10)
Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
Computational
Description (TAIR10)
vesicle-associated membrane protein 714 (VAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2317 Blast hits to 2315 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 487; Plants - 553; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
Protein Annotations
BioGrid:17572eggNOG:COG5143eggNOG:KOG0859EMBL:AB007651EMBL:AY057699EMBL:AY116956EMBL:CP002688
EnsemblPlants:AT5G22360EnsemblPlants:AT5G22360.1entrez:832297Gene3D:1.10.3840.10Gene3D:3.30.450.50GeneID:832297Genevisible:Q9FMR5
GO:GO:0000139GO:GO:0000149GO:GO:0005484GO:GO:0005773GO:GO:0005794GO:GO:0006906GO:GO:0009651
GO:GO:0015031GO:GO:0016021Gramene:AT5G22360.1hmmpanther:PTHR21136hmmpanther:PTHR21136:SF101HOGENOM:HOG000042711InParanoid:Q9FMR5
IntAct:Q9FMR5InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012KEGG:ath:AT5G22360KO:K08515OMA:NARDFRV
PaxDb:Q9FMR5Pfam:PF00957Pfam:PF13774Pfam:Q9FMR5Pfscan:PS50859Pfscan:PS50892PhylomeDB:Q9FMR5
PRIDE:Q9FMR5PRINTS:PR00219PRO:PR:Q9FMR5PROSITE:PS00417PROSITE:PS50859PROSITE:PS50892ProteinModelPortal:Q9FMR5
Proteomes:UP000006548RefSeq:NP_197628.1scanprosite:PS00417SMART:SM01270SMR:Q9FMR5STRING:3702.AT5G22360.1SUPFAM:SSF58038
SUPFAM:SSF64356TAIR:AT5G22360tair10-symbols:ATVAMP714tair10-symbols:VAMP714TMHMM:TMhelixUniGene:At.7361UniProt:Q9FMR5
Coordinates (TAIR10) chr5:-:7404379..7405654
Molecular Weight (calculated) 25318.10 Da
IEP (calculated) 9.24
GRAVY (calculated) 0.07
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)