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AT5G22355.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.909
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8VYeggNOG:ENOG41119PWEMBL:AB007651EMBL:CP002688EnsemblPlants:AT5G22355EnsemblPlants:AT5G22355.1entrez:832296
GeneID:832296GO:GO:0005622GO:GO:0008270GO:GO:0035556GO:GO:0047134Gramene:AT5G22355.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152InterPro:IPR001965InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT5G22355OMA:NINRDEGPfam:PF03107
Pfam:PF07649PhylomeDB:Q9FMR6Proteomes:UP000006548RefSeq:NP_680208.1SMART:SM00249SMR:Q9FMR6STRING:3702.AT5G22355.1
SUPFAM:SSF57889TAIR:AT5G22355UniGene:At.45624UniProt:Q9FMR6
Coordinates (TAIR10) chr5:+:7401762..7403756
Molecular Weight (calculated) 76178.80 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.43
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLPPKILPT HKYPLTISTR FVNDSCKGCN IKGPIYGGYR CNEPSSTSLF FHKECAEAPP EIINHPSHPQ HTLKLHNSLR NPCKCNLCGK TFFAFGYRCS
101: SKCDFIVDLT CGINPLPVSI EHPKSHHHPV IFLKEPAKPG RRRCGICKGY NGGCSYACLE CEVHFHVECV NLSQEVNHPS HPQHSLKLLE YESLTSDAEE
201: TCLLCGERPD KVLYRCSICN FSVCRFCTKD PPPLAIEHHK THEHRLVLLS RLISFECNAC GMQGDRSPYM CVQCGFVVHR TCIDLPRVIN INRHDHRISF
301: THHLGVGYSR CGICRKDISQ YHGAYLCPRC PNYAAHSLCA TRKDVWDGVE LEGTPDDDDE DIVPFKVVGD NLIKHFSHEE HNLRLNKDNI NRDEGSRCEA
401: CVLPIYSDPI YNCEECRFIL HEKCANHPKK KRHVFHTKPF TLWSRPPRTF HSKDFRFYDV FRCYACRTKS TGFRYVSDWW VLDVRCGSRS EPVIHDGHRH
501: PLYYEHKKDH CCDACYKEID GYLLSCDTCD FDLDLHCTDL PKTVKHSCDN HPLSLCYGEN ATGKYWCDIC EAETDPSKWF YTCSKCVVTA HIECVLGDFS
601: RLMPGRIINY NNVRVEVVLN SYSSRPFCAK CHSRCRAPII LKLCDPYTGY ICSDACVVPD YQYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)