AT5G22355.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.732 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7401762..7403756 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76178.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLPPKILPT HKYPLTISTR FVNDSCKGCN IKGPIYGGYR CNEPSSTSLF FHKECAEAPP EIINHPSHPQ HTLKLHNSLR NPCKCNLCGK TFFAFGYRCS 101: SKCDFIVDLT CGINPLPVSI EHPKSHHHPV IFLKEPAKPG RRRCGICKGY NGGCSYACLE CEVHFHVECV NLSQEVNHPS HPQHSLKLLE YESLTSDAEE 201: TCLLCGERPD KVLYRCSICN FSVCRFCTKD PPPLAIEHHK THEHRLVLLS RLISFECNAC GMQGDRSPYM CVQCGFVVHR TCIDLPRVIN INRHDHRISF 301: THHLGVGYSR CGICRKDISQ YHGAYLCPRC PNYAAHSLCA TRKDVWDGVE LEGTPDDDDE DIVPFKVVGD NLIKHFSHEE HNLRLNKDNI NRDEGSRCEA 401: CVLPIYSDPI YNCEECRFIL HEKCANHPKK KRHVFHTKPF TLWSRPPRTF HSKDFRFYDV FRCYACRTKS TGFRYVSDWW VLDVRCGSRS EPVIHDGHRH 501: PLYYEHKKDH CCDACYKEID GYLLSCDTCD FDLDLHCTDL PKTVKHSCDN HPLSLCYGEN ATGKYWCDIC EAETDPSKWF YTCSKCVVTA HIECVLGDFS 601: RLMPGRIINY NNVRVEVVLN SYSSRPFCAK CHSRCRAPII LKLCDPYTGY ICSDACVVPD YQYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)