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AT5G22330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24012629 (2013): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 (RIN1); FUNCTIONS IN: protein binding; INVOLVED IN: meristem development, regulation of defense response to fungus, incompatible interaction; LOCATED IN: nucleolus, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49830.1); Has 3940 Blast hits to 3882 proteins in 1253 species: Archae - 399; Bacteria - 2038; Metazoa - 370; Fungi - 432; Plants - 137; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-750-MONOMERBioGrid:17568EC:3.6.4.12eggNOG:COG1224
eggNOG:KOG1942EMBL:AB007651EMBL:AY084606EMBL:BT000923
EMBL:CP002688EnsemblPlants:AT5G22330EnsemblPlants:AT5G22330.1entrez:832293
Gene3D:3.40.50.300GeneID:832293Genevisible:Q9FMR9GO:GO:0005524
GO:GO:0005634GO:GO:0005730GO:GO:0005829GO:GO:0009507
GO:GO:0009908GO:GO:0030154GO:GO:0043141GO:GO:0048507
GO:GO:2000072Gramene:AT5G22330.1hmmpanther:PTHR11093HOGENOM:HOG000190885
InParanoid:Q9FMR9InterPro:IPR003593InterPro:IPR010339InterPro:IPR027238
InterPro:IPR027417KEGG:ath:AT5G22330KO:K04499OMA:YSTSDME
PANTHER:PTHR11093PaxDb:Q9FMR9Pfam:PF06068Pfam:Q9FMR9
PhylomeDB:Q9FMR9PRIDE:Q9FMR9PRO:PR:Q9FMR9ProteinModelPortal:Q9FMR9
Proteomes:UP000006548RefSeq:NP_197625.1SMART:SM00382SMR:Q9FMR9
STRING:3702.AT5G22330.1SUPFAM:SSF52540TAIR:AT5G22330tair10-symbols:ATTIP49A
tair10-symbols:RIN1UniGene:At.20149UniProt:Q9FMR9
Coordinates (TAIR10) chr5:-:7391026..7394071
Molecular Weight (calculated) 50326.30 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.13
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKVKIEEIQ STAKKQRIAT HTHIKGLGLE PTGIPIKLAA GFVGQLEARE AAGLVVDMIK QKKMAGKALL LAGPPGTGKT ALALGISQEL GSKVPFCPMV
101: GSEVYSSEVK KTEVLMENFR RAIGLRIKET KEVYEGEVTE LSPEETESLT GGYGKSISHV VITLKTVKGT KHLKLDPTIY DALIKEKVAV GDVIYIEANS
201: GAVKRVGRSD AFATEFDLEA EEYVPLPKGE VHKKKEIVQD VTLQDLDAAN ARPQGGQDIL SLMGQMMKPR KTEITDKLRQ EINKVVNRYI DEGVAELVPG
301: VLFIDEVHML DMECFSYLNR ALESSLSPIV IFATNRGVCN VRGTDMPSPH GVPIDLLDRL VIIRTQIYDP SEMIQIIAIR AQVEELTVDE ECLVLLGEIG
401: QRTSLRHAVQ LLSPASIVAK MNGRDNICKA DIEEVTSLYL DAKSSAKLLH EQQEKYIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)