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AT5G22320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0531EMBL:AB007651EMBL:AY056427EMBL:AY090323EMBL:CP002688EnsemblPlants:AT5G22320
EnsemblPlants:AT5G22320.1entrez:832292ExpressionAtlas:Q9FMS0Gene3D:3.80.10.10GeneID:832292Gramene:AT5G22320.1hmmpanther:PTHR24365
hmmpanther:PTHR24365:SF276HOGENOM:HOG000006314InterPro:IPR001611InterPro:IPR003591InterPro:IPR025875InterPro:IPR032675OMA:SDCRIKA
Pfam:PF12799Pfscan:PS51450PhylomeDB:Q9FMS0PROSITE:PS51450Proteomes:UP000006548RefSeq:NP_568416.1SMART:SM00369
SMR:Q9FMS0STRING:3702.AT5G22320.1SUPFAM:SSF52058TAIR:AT5G22320UniGene:At.7358UniProt:Q9FMS0
Coordinates (TAIR10) chr5:-:7388175..7390426
Molecular Weight (calculated) 50539.20 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.80
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSLTVEQVL KEKKTNDPDS VKELNLGHKA LTDVSCLSKF KNLEKLDLRF NNLTDLQGLK SCVNLKWLSV VENKLQSLNG IEALTKLTVL NAGKNKLKSM
101: NEISSLVNLR ALILNDNEIS SICKLDLLKD LNSLVLSRNP ISEIGDSLSK LKNLSKISLS DCRIKAIGSS LKSCSDLKEL RLANNEIKAL PAELAVNKRL
201: LNLDVGNNVI TQLSGLEVLG TLSCLRNLNI RGNPISDNDK SAKKVRTLLL PSVNVFNAQP LEKSSRNAKH IRLDTDDETF DAYHNKSAEE EQSKEDRKRK
301: KSSKRNKSEE EEVNNEDHKS KKKKSKSNTN VDQVETKKKE EHKEKTIPSN NDDDDDAEKK QKRATPKEEL DAIDDAETSF AEIFSRENVP KGSEDGIEKK
401: KKSSVQETGL VKVIDTKANK KKKKSEKKQS KSVVIDLPME VEIGLGGESK WE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)