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AT5G22250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44260.1); Has 907 Blast hits to 897 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 150; Plants - 381; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
DNASU:832285EC:3.1.13.4eggNOG:COG5228eggNOG:KOG0304
EMBL:AB007651EMBL:AY063985EMBL:BT001962EMBL:CP002688
EnsemblPlants:AT5G22250EnsemblPlants:AT5G22250.1entrez:832285Gene3D:3.30.420.10
GeneID:832285Genevisible:Q9FMS6GO:GO:0000289GO:GO:0000932
GO:GO:0003723GO:GO:0004535GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0008408GO:GO:0017148GO:GO:0030015
GO:GO:0042742GO:GO:0043928GO:GO:0046872GO:GO:0090305
GO:GO:0090503Gramene:AT5G22250.1hmmpanther:PTHR10797hmmpanther:PTHR10797:SF3
HOGENOM:HOG000173077InParanoid:Q9FMS6InterPro:IPR006941InterPro:IPR012337
iPTMnet:Q9FMS6KEGG:ath:AT5G22250KO:K12581OMA:REFDPRV
PaxDb:Q9FMS6Pfam:PF04857Pfam:Q9FMS6PhylomeDB:Q9FMS6
PRIDE:Q9FMS6PRO:PR:Q9FMS6ProteinModelPortal:Q9FMS6Proteomes:UP000006548
RefSeq:NP_197617.1SMR:Q9FMS6STRING:3702.AT5G22250.1SUPFAM:SSF53098
TAIR:AT5G22250UniGene:At.27479UniProt:Q9FMS6
Coordinates (TAIR10) chr5:-:7365605..7366441
Molecular Weight (calculated) 32170.30 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.23
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)