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AT5G22120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.938
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UEVeggNOG:KOG4483EMBL:AK175418EMBL:AK175438
EMBL:AL589883EMBL:AY093778EMBL:AY149952EMBL:CP002688
EnsemblPlants:AT5G22120EnsemblPlants:AT5G22120.1entrez:832273Gene3D:3.30.70.330
GeneID:832273GO:GO:0000166Gramene:AT5G22120.1hmmpanther:PTHR21678
IntAct:Q9C576InterPro:IPR012677KEGG:ath:AT5G22120OMA:RISEPNW
PhylomeDB:Q9C576PRO:PR:Q9C576Proteomes:UP000006548RefSeq:NP_680198.1
SMR:Q9C576STRING:3702.AT5G22120.1SUPFAM:SSF54928TAIR:AT5G22120
UniGene:At.20150UniProt:Q9C576
Coordinates (TAIR10) chr5:-:7334612..7336755
Molecular Weight (calculated) 42094.30 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.74
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)