AT5G22030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-specific protease 8 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ubiquitin-specific protease 8 (UBP8); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 5 (TAIR:AT2G40930.1); Has 10748 Blast hits to 7392 proteins in 262 species: Archae - 0; Bacteria - 6; Metazoa - 5718; Fungi - 1753; Plants - 1297; Viruses - 10; Other Eukaryotes - 1964 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7290155..7296344 | ||||||||||||
| Molecular Weight (calculated) | 103228.00 Da | ||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||
| Length | 913 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGTSPDESP DSTTQRIDSF NGEQRVYFVP LRWWKDAQDS MPSESVEKRE ILYTASCGSS YGGPMKLINN IFNSDILFDL RREGDALQNG ETGEASVSGR 101: DFALVSSDMW LQALKCIRSN DSFMEFFVFS ASVHSLENEF LKKRLRYHDD KNTEKGVKSF SAGGVDRGDV YPVQLRLSVL QETNSLAWSA RLSFDKMIKN 201: LNWILDNSVE CFRRACKIFS LDSEQLRIWD ISGQTTLFFE SDVSNSKDCQ QQADQEILLE LQIYGLSDSI KLKESKKEDG STQQTNGITN GMNGGTVFRF 301: GRSNSLSFLG KAGEAGTLGL TGLQNLGNTC FMNSSLQCLA HTPKLVDFFL GEYSKEINLD NPLGMKGEIA LAFGDLLRSL WAPGASTVAP RTFKAKLARF 401: APQFSGFNQH DSQELLAFLL DGLHEDLNRV KNKPYVEAKD GDGRPDAEVA DEYWRNHVAR NDSIIVDVCQ GQYKSTLVCP ICKKVSVMFD PFMYLSLPLP 501: CTSMRTMDLT VMSADGSSLP IPLTVNVPKF GKFEDLHKAL VTACSLPEEE TLLVTEVYNN RIIRFLEEPT DSLTLIRDGD KLVVYRLKKD ANNSPLIVYM 601: HQKLEEQFIS GKSSPTWKAF GIPLVSRLCD VENGSDVENL YLKLLSSFKM PTEFFTENLE NPTEEEATDK TDTDGTTSVE DTNSTDVKET TESLPDPVLR 701: LYLTDDRGNS IEAEMLKEKP VNKSKRLNVL ARWPVKELDV YDTCLLSSLP EVSKSGTKRP QESVSLFKCL EAFLTEEPLG PDDMWYCPGC KEHRQAIKKL 801: DLWRLPEILV IHLKRFSYSR FMKNKLEAYV DFPLDNLDLS SYISYKNGQT TYRYMLYAIS NHYGSMGGGH YTAYVHHGGD RWYDFDDSHV HQISQEKIKT 901: SAAYVLFYKR LVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)