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AT5G21274.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.765
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : calmodulin 6
Curator
Summary (TAIR10)
Encodes a calmodulin isoform. Expressed in leaves.
Computational
Description (TAIR10)
calmodulin 6 (CAM6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 34463 Blast hits to 23268 proteins in 1758 species: Archae - 4; Bacteria - 213; Metazoa - 14512; Fungi - 7798; Plants - 6959; Viruses - 0; Other Eukaryotes - 4977 (source: NCBI BLink).
Protein Annotations
BioGrid:17520eggNOG:COG5126eggNOG:KOG0027EMBL:AC140977EMBL:AY050350EMBL:AY094037EMBL:CP002688
EMBL:Z12024EnsemblPlants:AT5G21274EnsemblPlants:AT5G21274.1entrez:832245Gene3D:1.10.238.10GeneID:832245GO:GO:0005509
GO:GO:0005622GO:GO:0019722Gramene:AT5G21274.1hmmpanther:PTHR23050hmmpanther:PTHR23050:SF166HOGENOM:HOG000233018IntAct:Q03509
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT5G21274KO:K02183OMA:DEMIREPPaxDb:Q03509
Pfam:PF13499Pfam:Q03509Pfscan:PS50222PhylomeDB:Q03509PIR:S35187PRIDE:Q03509PRO:PR:Q03509
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q03509Proteomes:UP000006548RefSeq:NP_850860.1scanprosite:PS00018SMART:SM00054
SMR:Q03509STRING:3702.AT5G21274.1SUPFAM:SSF47473TAIR:AT5G21274tair10-symbols:ACAM-6tair10-symbols:CAM6UniGene:At.21106
UniProt:Q03509
Coordinates (TAIR10) chr5:-:7214740..7215950
Molecular Weight (calculated) 16834.60 Da
IEP (calculated) 3.88
GRAVY (calculated) -0.62
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLSDE EVDEMIREAD VDGDGQINYE EFVKVMMAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)