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AT5G21160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LA RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17517eggNOG:COG5193eggNOG:KOG2590EMBL:AC140977EMBL:AK221883EMBL:AY052365EMBL:AY139801
EMBL:CP002688EnsemblPlants:AT5G21160EnsemblPlants:AT5G21160.1entrez:832242ExpressionAtlas:Q940X9Gene3D:1.10.10.10GeneID:832242
Genevisible:Q940X9GO:GO:0000932GO:GO:0003723GO:GO:0005829GO:GO:0005844GO:GO:0006402GO:GO:0010286
hmmpanther:PTHR22792hmmpanther:PTHR22792:SF68HOGENOM:HOG000082993IntAct:Q940X9InterPro:IPR006607InterPro:IPR006630InterPro:IPR011991
iPTMnet:Q940X9PaxDb:Q940X9Pfam:PF05383Pfam:Q940X9Pfscan:PS50961PhylomeDB:Q940X9PRIDE:Q940X9
PRO:PR:Q940X9PROSITE:PS50961ProteinModelPortal:Q940X9Proteomes:UP000006548RefSeq:NP_568409.1SMART:SM00684SMART:SM00715
SMR:Q940X9STRING:3702.AT5G21160.3SUPFAM:SSF46785TAIR:AT5G21160UniGene:At.21994UniProt:Q940X9
Coordinates (TAIR10) chr5:-:7199191..7203879
Molecular Weight (calculated) 91381.80 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.86
Length 826 amino acids
Sequence (TAIR10)
(BLAST)
001: MMAETEGSVA DDRELITREG GIGTKSPWKT TTSPVETIDA PVMGAHSWPA LADAAQQPRP KNPPAPAPAP PSKNIPTSIP IPTPAVTGQA KSKGGGKANP
101: GHKNPSGRHS KPGPRSNQNG PPPPPYLVHA VPYHPPPFPP MVPLPHAAGP DFPYAPYPPY PVPVPPVTES GNEKQVQASP LPPVLPAPQG DPGKPWPHQR
201: GFDPRNMPQG AGPRNFGRPP FMGPAPGFLV GPGPGFPGPV YYLPGPPPGA IRGPYPPRFA PYPVNQGPPI LSPEKLDLRD RVLKQVEYYF SDENLENDHY
301: LISLMDEEGW VPTKIIAGFK RVKAMTMDVD FIVYALGFSN SVEVQGDQIR KRDKWSDWIP ASKKSTSAET IGDGDKDSPK SITSGDNFGN PSKGSSKPTV
401: SDFSSEGAQS SRTNNYKSGN LKSSADEKRN VEDLSNDFSN TFLLDEELDL EHRSPRKSGL SMSKSIEYED DDMAVDDQDI QKLVIVTQNS GKSDGAGIGG
501: TEAKNIPKEL ASTINDGLYY FEQELKKKRS GRRKNNSHLD TKDGKIKSGE GLNTKLGENS AANDGGEEHG IITSRRKQNK GTHKHHTAHA RRFFSSNIRN
601: NGNISESPPS SSIGFFFGST PPDSHGPRLS KLSSSPQCTL SGSSPPVGSL PKSFPPFQHP SHQLLEENGF KQEKYLKYRK RCLNERKKLG SGCSEEMNHL
701: YRFWSYFLRD TFVLSMYDDF QKFALEDAAG NYDYGLECLF RFYSYGLEKH FDEDLYKDFE KLSLDFYHKG NLYGLEKYWA FHHYRGKEEP ITKHPELEKL
801: LKEEFRSIDD FRAKETITNQ KENKSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)