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AT5G21090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G43740.1); Has 79109 Blast hits to 18390 proteins in 732 species: Archae - 33; Bacteria - 1866; Metazoa - 5774; Fungi - 472; Plants - 66918; Viruses - 0; Other Eukaryotes - 4046 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G21090-MONOMEReggNOG:COG4886eggNOG:KOG0619EMBL:AC140977EMBL:AF324989EMBL:AF370543EMBL:AK317417
EMBL:AY081542EMBL:BT002517EMBL:BT006268EMBL:CP002688EnsemblPlants:AT5G21090EnsemblPlants:AT5G21090.1entrez:832233
Gene3D:3.80.10.10GeneID:832233GO:GO:0007165GO:GO:0019199Gramene:AT5G21090.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF1
HOGENOM:HOG000116557InterPro:IPR001611InterPro:IPR013210InterPro:IPR031048InterPro:IPR032675KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1
KEGG:ath:AT5G21090OMA:CGTIPTNPANTHER:PTHR27001:SF1Pfam:PF08263Pfam:PF13855PhylomeDB:Q9FPJ5Proteomes:UP000006548
RefSeq:NP_197608.1SMR:Q9FPJ5STRING:3702.AT5G21090.1SUPFAM:SSF52058TAIR:AT5G21090UniGene:At.24114UniProt:Q9FPJ5
Coordinates (TAIR10) chr5:+:7164758..7166904
Molecular Weight (calculated) 24098.80 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.16
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRNYRWEL FAASLTLTLA LIHLVEANSE GDALYALRRS LTDPDHVLQS WDPTLVNPCT WFHVTCNQDN RVTRVDLGNS NLSGHLAPEL GKLEHLQYLE
101: LYKNNIQGTI PSELGNLKNL ISLDLYNNNL TGIVPTSLGK LKSLVFLRLN DNRLTGPIPR ALTAIPSLKV VDVSSNDLCG TIPTNGPFAH IPLQNFENNP
201: RLEGPELLGL ASYDTNCT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)