AT5G20950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 10079 Blast hits to 9261 proteins in 1444 species: Archae - 71; Bacteria - 6091; Metazoa - 14; Fungi - 1552; Plants - 486; Viruses - 0; Other Eukaryotes - 1865 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7107609..7110775 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67930.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTLSKVLCL MLLCCIVAAA EGTLKYKDPK QPLGARIRDL MNRMTLQEKI GQMVQIERSV ATPEVMKKYF IGSVLSGGGS VPSEKATPET WVNMVNEIQK 101: ASLSTRLGIP MIYGIDAVHG HNNVYGATIF PHNVGLGVTR DPNLVKRIGA ATALEVRATG IPYAFAPCIA VCRDPRWGRC YESYSEDYRI VQQMTEIIPG 201: LQGDLPTKRK GVPFVGGKTK VAACAKHFVG DGGTVRGIDE NNTVIDSKGL FGIHMPGYYN AVNKGVATIM VSYSAWNGLR MHANKELVTG FLKNKLKFRG 301: FVISDWQGID RITTPPHLNY SYSVYAGISA GIDMIMVPYN YTEFIDEISS QIQKKLIPIS RIDDALKRIL RVKFTMGLFE EPLADLSFAN QLGSKEHREL 401: AREAVRKSLV LLKNGKTGAK PLLPLPKKSG KILVAGAHAD NLGYQCGGWT ITWQGLNGND HTVGTTILAA VKNTVAPTTQ VVYSQNPDAN FVKSGKFDYA 501: IVVVGEPPYA EMFGDTTNLT ISDPGPSIIG NVCGSVKCVV VVVSGRPVVI QPYVSTIDAL VAAWLPGTEG QGVADALFGD YGFTGKLART WFKSVKQLPM 601: NVGDRHYDPL YPFGFGLTTK PYKM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)