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AT5G20950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 10079 Blast hits to 9261 proteins in 1444 species: Archae - 71; Bacteria - 6091; Metazoa - 14; Fungi - 1552; Plants - 486; Viruses - 0; Other Eukaryotes - 1865 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20950-MONOMERBioCyc:ARA:GQT-2584-MONOMERCAZy:GH3eggNOG:COG1472eggNOG:ENOG410IGIAEMBL:AF462808EMBL:AY091027
EMBL:AY142679EMBL:CP002688EnsemblPlants:AT5G20950EnsemblPlants:AT5G20950.1EnsemblPlants:AT5G20950.2entrez:832220Gene3D:3.20.20.300
Gene3D:3.40.50.1700GeneID:832220GO:GO:0004553GO:GO:0005618GO:GO:0005975GO:GO:0009505GO:GO:0009506
GO:GO:0016020Gramene:AT5G20950.1Gramene:AT5G20950.2hmmpanther:PTHR30620hmmpanther:PTHR30620:SF51HOGENOM:HOG000031214InterPro:IPR001764
InterPro:IPR002772InterPro:IPR017853InterPro:IPR026892KEGG:ath:AT5G20950KO:K05349OMA:NHGMMTIPANTHER:PTHR30620
Pfam:PF00933Pfam:PF01915PhylomeDB:Q8W112PRINTS:PR00133Proteomes:UP000006548RefSeq:NP_197595.2RefSeq:NP_851048.1
SMR:Q8W112STRING:3702.AT5G20950.1SUPFAM:0046644SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT5G20950UniGene:At.23560
UniProt:Q8W112
Coordinates (TAIR10) chr5:-:7107609..7110775
Molecular Weight (calculated) 67930.70 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.03
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLSKVLCL MLLCCIVAAA EGTLKYKDPK QPLGARIRDL MNRMTLQEKI GQMVQIERSV ATPEVMKKYF IGSVLSGGGS VPSEKATPET WVNMVNEIQK
101: ASLSTRLGIP MIYGIDAVHG HNNVYGATIF PHNVGLGVTR DPNLVKRIGA ATALEVRATG IPYAFAPCIA VCRDPRWGRC YESYSEDYRI VQQMTEIIPG
201: LQGDLPTKRK GVPFVGGKTK VAACAKHFVG DGGTVRGIDE NNTVIDSKGL FGIHMPGYYN AVNKGVATIM VSYSAWNGLR MHANKELVTG FLKNKLKFRG
301: FVISDWQGID RITTPPHLNY SYSVYAGISA GIDMIMVPYN YTEFIDEISS QIQKKLIPIS RIDDALKRIL RVKFTMGLFE EPLADLSFAN QLGSKEHREL
401: AREAVRKSLV LLKNGKTGAK PLLPLPKKSG KILVAGAHAD NLGYQCGGWT ITWQGLNGND HTVGTTILAA VKNTVAPTTQ VVYSQNPDAN FVKSGKFDYA
501: IVVVGEPPYA EMFGDTTNLT ISDPGPSIIG NVCGSVKCVV VVVSGRPVVI QPYVSTIDAL VAAWLPGTEG QGVADALFGD YGFTGKLART WFKSVKQLPM
601: NVGDRHYDPL YPFGFGLTTK PYKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)