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AT5G20920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24012629 (2013): nucleus
  • PMID:22215637 (2012): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 2 beta subunit
Curator
Summary (TAIR10)
protein synthesis initiation factor eIF2 beta
Computational
Description (TAIR10)
eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1325 Blast hits to 1322 proteins in 359 species: Archae - 272; Bacteria - 0; Metazoa - 350; Fungi - 278; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
Protein Annotations
BioGrid:17491eggNOG:COG1601eggNOG:KOG2768EMBL:AF296834EMBL:AF353095EMBL:AY087810EMBL:AY128324
EMBL:BT000056EMBL:CP002688EMBL:Z18133EnsemblPlants:AT5G20920EnsemblPlants:AT5G20920.1EnsemblPlants:AT5G20920.3entrez:832216
ExpressionAtlas:Q41969Gene3D:3.30.30.50GeneID:832216Genevisible:Q41969GO:GO:0003743GO:GO:0005886GO:GO:0046872
hmmpanther:PTHR23001HOGENOM:HOG000107197InParanoid:Q41969IntAct:Q41969InterPro:IPR002735InterPro:IPR016189InterPro:IPR016190
iPTMnet:Q41969KEGG:ath:AT5G20920KO:K03238OMA:AGVHEEDPaxDb:Q41969Pfam:PF01873Pfam:Q41969
PhylomeDB:Q41969PRIDE:Q41969PRO:PR:Q41969ProteinModelPortal:Q41969Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-382556
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72731RefSeq:NP_001078610.1RefSeq:NP_197592.1SMART:SM00653SMR:Q41969
STRING:3702.AT5G20920.1SUPFAM:SSF100966SUPFAM:SSF75689TAIR:AT5G20920tair10-symbols:EIF2 BETAtair10-symbols:EMB1401UniGene:At.21465
UniProt:Q41969
Coordinates (TAIR10) chr5:-:7094994..7096661
Molecular Weight (calculated) 30664.60 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.76
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEINEIRE EQEQLAPFDP SKKKKKKKVV IQEPVEDLAE SSQTEKSDSL PVNDGLESSF TGMKKKKKKP TESSLLNNES VDAGEDLDEI ANDEQEGEEG
101: IVLQQRYPWE GSERDYIYDE LLGRVFNILR ENNPELAGDR RRTVMRPPQV LREGTKKTVF VNFMDLCKTM HRQPDHVMQY LLAELGTSGS LDGQQRLVVK
201: GRFAPKNFEG ILRRYITDYV ICLGCKSPDT ILSKENRLFF LRCEKCGSQR SVAPIKTGFV ARVSRRKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)