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AT5G20910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9587 Blast hits to 9565 proteins in 281 species: Archae - 0; Bacteria - 0; Metazoa - 2561; Fungi - 845; Plants - 4808; Viruses - 65; Other Eukaryotes - 1308 (source: NCBI BLink).
Protein Annotations
BioGrid:17490EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF296834EMBL:AJ251087EMBL:AY081329
EMBL:BT000238EMBL:CP002688EMBL:DQ059130EnsemblPlants:AT5G20910EnsemblPlants:AT5G20910.1entrez:832215Gene3D:3.30.40.10
GeneID:832215Genevisible:Q8RXD3GO:GO:0000209GO:GO:0004842GO:GO:0005634GO:GO:0005829GO:GO:0008270
GO:GO:0009737GO:GO:0009738GO:GO:0009788GO:GO:0016567GO:GO:0016874GO:GO:0042787GO:GO:0043161
GO:GO:0061630Gramene:AT5G20910.1hmmpanther:PTHR22763hmmpanther:PTHR22763:SF50HOGENOM:HOG000243158InParanoid:Q8RXD3IntAct:Q8RXD3
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G20910KO:K16274ncoils:CoilOMA:CAICKENPaxDb:Q8RXD3
Pfam:PF13639Pfam:Q8RXD3Pfscan:PS50089PhylomeDB:Q8RXD3PRIDE:Q8RXD3PRO:PR:Q8RXD3PROSITE:PS50089
ProteinModelPortal:Q8RXD3Proteomes:UP000006548RefSeq:NP_197591.1SMART:SM00184SMR:Q8RXD3STRING:3702.AT5G20910.1SUPFAM:SSF57850
TAIR:AT5G20910tair10-symbols:AIP2UniGene:At.1134UniGene:At.68499UniPathway:UPA00143UniProt:Q8RXD3
Coordinates (TAIR10) chr5:-:7092663..7094310
Molecular Weight (calculated) 34809.10 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.55
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)