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AT5G20900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.646
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jasmonate-zim-domain protein 12 (JAZ12); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 11 (TAIR:AT3G43440.2); Has 425 Blast hits to 418 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:17489DIP:DIP-53279NeggNOG:ENOG410J2KBeggNOG:ENOG410YSZ1EMBL:AF296834EMBL:AF360184EMBL:AY051013
EMBL:CP002688EnsemblPlants:AT5G20900EnsemblPlants:AT5G20900.1entrez:832214GeneID:832214Genevisible:Q9C5K8GO:GO:0003714
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009611GO:GO:0031347GO:GO:1903507
GO:GO:2000022Gramene:AT5G20900.1hmmpanther:PTHR33077hmmpanther:PTHR33077:SF5HOGENOM:HOG000154575InParanoid:Q9C5K8IntAct:Q9C5K8
InterPro:IPR010399InterPro:IPR018467iPTMnet:Q9C5K8KEGG:ath:AT5G20900KO:K13464OMA:EASTIRPPaxDb:Q9C5K8
Pfam:PF06200Pfam:PF09425Pfam:Q9C5K8Pfscan:PS51320PhylomeDB:Q9C5K8PRIDE:Q9C5K8PRO:PR:Q9C5K8
PROSITE:PS51320Proteomes:UP000006548RefSeq:NP_197590.1SMART:SM00979STRING:3702.AT5G20900.1TAIR:AT5G20900tair10-symbols:JAZ12
tair10-symbols:TIFY3BUniGene:At.1134UniGene:At.68499UniProt:Q9C5K8
Coordinates (TAIR10) chr5:+:7090883..7092201
Molecular Weight (calculated) 19934.50 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.41
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)