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AT5G20885.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.755
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G43430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK118243EMBL:AY057610EMBL:BT000813EMBL:CP002688EnsemblPlants:AT5G20885
EnsemblPlants:AT5G20885.1entrez:832212Gene3D:3.30.40.10GeneID:832212GO:GO:0008270GO:GO:0016021Gramene:AT5G20885.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF147HOGENOM:HOG000029121InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G20885OMA:WILAWIL
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q93ZD8PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568404.1SMART:SM00184
SMR:Q93ZD8STRING:3702.AT5G20885.1SUPFAM:SSF57850TAIR:AT5G20885TMHMM:TMhelixUniGene:At.26270UniProt:Q93ZD8
Coordinates (TAIR10) chr5:-:7084133..7084663
Molecular Weight (calculated) 19936.50 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.26
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFFIEDSGL IVTQLLYKMA VLITVLRWIL AWILRYRSRS RSTSSSTSAC PSISSQAIKE SLSVTTFRDA AERSPAMIND TCAVCLGDLE DGDEVRELRN
101: CSHMFHRECI DRWLDYECCG GDENNEGEED NHRTCPLCRT PLLAANTTSC GDWPTKNEPS WAVERLLYLF GDDLHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)