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AT5G20810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G43120.1); Has 1495 Blast hits to 1481 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1494; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ0AeggNOG:ENOG410Z28UEMBL:AK118610EMBL:BT003702EMBL:CP002688EnsemblPlants:AT5G20810EnsemblPlants:AT5G20810.1
entrez:832204ExpressionAtlas:Q8GWV6GeneID:832204GO:GO:0009733Gramene:AT5G20810.1hmmpanther:PTHR31374hmmpanther:PTHR31374:SF22
HOGENOM:HOG000238628IntAct:Q8GWV6InterPro:IPR003676Pfam:PF02519PhylomeDB:Q8GWV6Proteomes:UP000006548RefSeq:NP_197581.2
STRING:3702.AT5G20810.2TAIR:AT5G20810UniGene:At.31144UniGene:At.46639UniProt:Q8GWV6
Coordinates (TAIR10) chr5:+:7044791..7045555
Molecular Weight (calculated) 18274.80 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.41
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MDENNAAKLT GIRQIVRLKE ILQKWQTVTI GPKSEVPPLA AGKQAVAMIS PAINKRLLDV KNGDSDEETC QSPEPPHDVP KGNLAVYVGP ELRRFIIPTS
101: YLSHSLFKVL LEKAEEEFGF DQSGALTIPC EVETFKYLLK CMENNLKDLH PDDNSDGEAV AAKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)