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AT5G20790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J43XeggNOG:ENOG410Z6NZEMBL:CP002688EnsemblPlants:AT5G20790
EnsemblPlants:AT5G20790.1entrez:832202ExpressionAtlas:F4K5N0GeneID:832202
GO:GO:0016021Gramene:AT5G20790.1hmmpanther:PTHR36369hmmpanther:PTHR36369:SF1
InParanoid:F4K5N0OMA:WRIRVTTPaxDb:F4K5N0Proteomes:UP000006548
RefSeq:NP_568401.1STRING:3702.AT5G20790.1TAIR:AT5G20790TMHMM:TMhelix
UniGene:At.31146UniProt:F4K5N0
Coordinates (TAIR10) chr5:-:7040046..7040627
Molecular Weight (calculated) 20972.80 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.00
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLESPLEA LAFEYASLGV FAVVNNVWTW IAVVTAAVSF WRIRVTTIGV GDGHACVLIE ELTGSKSENE SGRLEPKSIT GPVKETVARV KETVTKTEPL
101: ICDDGVTKGK LTMCYEVDVD VDGGRCVNGD LTAVSYGGGL GNCGGDWWEK WDGVVRMRNG DDSWYRYVDL TVINGNVVRL WDDNKTLVTA ACV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)