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AT5G20740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 847 Blast hits to 840 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 847; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY82eggNOG:ENOG41116ANEMBL:BT003915EMBL:BT020562
EMBL:CP002688EnsemblPlants:AT5G20740EnsemblPlants:AT5G20740.1entrez:832197
Gene3D:1.20.140.40GeneID:832197GO:GO:0004857Gramene:AT5G20740.1
hmmpanther:PTHR31080hmmpanther:PTHR31080:SF26HOGENOM:HOG000240597InterPro:IPR006501
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G20740OMA:ITNVARV
Pfam:PF04043PhylomeDB:Q84WE4Proteomes:UP000006548RefSeq:NP_197574.1
SMART:SM00856SMR:Q84WE4STRING:3702.AT5G20740.1SUPFAM:SSF101148
TAIR:AT5G20740TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelix
UniGene:At.19637unipathway:UPA00545UniProt:Q84WE4
Coordinates (TAIR10) chr5:-:7025867..7026484
Molecular Weight (calculated) 22330.60 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.22
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTQNLFLV AIAFAVIFTA STVHGRHNGA EDIVHSSCEH ASYPSLCVRT LSSYSGPTIT NRRDLAQAAI KISLSHAQSA AKKLAVVRDS VGKKKQEKAA
101: LVDCVEMIGD SVDELSRTLG VLKHLRVSGG SAKEFRWQMS NAQTWASAAL TDDDTCLDGF QGMDDGEIKT EVKQWMTKVA RVTSNALYMV NQLDETRGKP
201: HDVHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)