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AT5G20650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.816
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21281364 (2011): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : copper transporter 5
Curator
Summary (TAIR10)
encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
Computational
Description (TAIR10)
copper transporter 5 (COPT5); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 497 Blast hits to 497 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 69; Plants - 156; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
BioGrid:17463eggNOG:ENOG4111I8DeggNOG:KOG3386EMBL:AF296832EMBL:AF466374EMBL:AY039578EMBL:AY054124
EMBL:AY086915EMBL:CP002688EnsemblPlants:AT5G20650EnsemblPlants:AT5G20650.1entrez:832188GeneID:832188Genevisible:Q93VM8
GO:GO:0005375GO:GO:0005770GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0009506GO:GO:0009737
GO:GO:0015680GO:GO:0016021Gramene:AT5G20650.1hmmpanther:PTHR12483hmmpanther:PTHR12483:SF39HOGENOM:HOG000195393InParanoid:Q93VM8
InterPro:IPR007274iPTMnet:Q93VM8KEGG:ath:AT5G20650KO:K14686OMA:SFYQYMEPANTHER:PTHR12483PaxDb:Q93VM8
Pfam:PF04145Pfam:Q93VM8PhylomeDB:Q93VM8PRIDE:Q93VM8PRO:PR:Q93VM8ProteinModelPortal:Q93VM8Proteomes:UP000006548
RefSeq:NP_197565.1SMR:Q93VM8STRING:3702.AT5G20650.1SwissPalm:Q93VM8TAIR:AT5G20650tair10-symbols:COPT5TCDB:1.A.56.1.11
TMHMM:TMhelixUniGene:At.24711UniGene:At.72357UniProt:Q93VM8
Coordinates (TAIR10) chr5:-:6985481..6985921
Molecular Weight (calculated) 15785.10 Da
IEP (calculated) 9.17
GRAVY (calculated) 0.41
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MMHMTFYWGI KATILFDFWK TDSWLSYILT LIACFVFSAF YQYLENRRIQ FKSLSSSRRA PPPPRSSSGV SAPLIPKSGT RSAAKAASVL LFGVNAAIGY
101: LLMLAAMSFN GGVFIAIVVG LTAGYAVFRS DDGGADTATD DPCPCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)