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AT5G20620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.647
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin 4
Curator
Summary (TAIR10)
encodes a ubiquitin polyprotein.
Computational
Description (TAIR10)
ubiquitin 4 (UBQ4); INVOLVED IN: protein modification process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0001EMBL:AF296832EMBL:CP002688EMBL:U33014EMBL:X12853EnsemblPlants:AT5G20620
EnsemblPlants:AT5G20620.1entrez:831899entrez:832184GeneID:832184Genevisible:P0CH32GO:GO:0005634GO:GO:0005737
GO:GO:0006511Gramene:AT5G20620.1hmmpanther:PTHR10666hmmpanther:PTHR10666:SF155InParanoid:P0CH32InterPro:IPR000626InterPro:IPR019954
InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT5G20620KO:K08770OMA:VHENTRRPaxDb:P0CH32Pfam:P0CH32
Pfam:PF00240Pfscan:PS50053PIR:S01425PRIDE:P0CH32PRINTS:PR00348PRO:PR:P0CH32PROSITE:PS00299
PROSITE:PS50053ProteinModelPortal:P0CH32Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174184
Reactome:R-ATH-179409Reactome:R-ATH-349425Reactome:R-ATH-450302Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862
Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696394Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-917729Reactome:R-ATH-983168RefSeq:NP_568397.1
scanprosite:PS00299SMART:SM00213SMR:P0CH32STRING:3702.AT5G20620.1SUPFAM:SSF54236TAIR:AT5G20620tair10-symbols:UBQ4
UniGene:At.26012UniGene:At.71604UniProt:P0CH32
Coordinates (TAIR10) chr5:-:6973315..6974463
Molecular Weight (calculated) 42788.70 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.44
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG SF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)