suba logo
AT5G20580.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.635
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast hits to 167 proteins in 73 species: Archae - 0; Bacteria - 25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II0TeggNOG:ENOG4111FGGEMBL:CP002688EnsemblPlants:AT5G20580EnsemblPlants:AT5G20580.1entrez:832180ExpressionAtlas:F4K5K3
GeneID:832180GO:GO:0016021Gramene:AT5G20580.1hmmpanther:PTHR31592InParanoid:F4K5K3InterPro:IPR029399KEGG:ath:AT5G20580
ncoils:CoilPaxDb:F4K5K3Pfam:PF14802PhylomeDB:F4K5K3PRIDE:F4K5K3ProteinModelPortal:F4K5K3Proteomes:UP000006548
RefSeq:NP_197558.2SMR:F4K5K3STRING:3702.AT5G20580.1TAIR:AT5G20580TMHMM:TMhelixUniGene:At.31168UniProt:F4K5K3
Coordinates (TAIR10) chr5:-:6958790..6962592
Molecular Weight (calculated) 39771.00 Da
IEP (calculated) 7.23
GRAVY (calculated) -0.08
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDRRASSV NPSTEQDNAM FLDILHEAPL FGHRESRSLV GSCIYLIILA CYAILAAGAP WILQSVDYLI PSLLCSCNVA LLMLTGMFQQ YFVNQVQKIR
101: LQGYYSFSQK LKHVVRLPFA IMAYGTASML LFMEWRPYVS VLPIFTVQRF IMSVEAISAA SFMIVFVGYV RQYNSVNSQP DVLNSLYSPL QPAALEGLRY
201: HEAGRLSDQQ MALLQYQREN LHYLSEEILR LQESLSKYET NGSSTPQVDL AHLVATRDQE LRTLSAEVDQ LHSELNLARS LISERDREIQ HVRNTNNQYV
301: AENERLRAIL GEWSMRAAKL ERALEVERIS NIELRKKVSA LRDQRQVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)