AT5G20580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.736 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast hits to 167 proteins in 73 species: Archae - 0; Bacteria - 25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6958790..6962592 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39771.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANDRRASSV NPSTEQDNAM FLDILHEAPL FGHRESRSLV GSCIYLIILA CYAILAAGAP WILQSVDYLI PSLLCSCNVA LLMLTGMFQQ YFVNQVQKIR 101: LQGYYSFSQK LKHVVRLPFA IMAYGTASML LFMEWRPYVS VLPIFTVQRF IMSVEAISAA SFMIVFVGYV RQYNSVNSQP DVLNSLYSPL QPAALEGLRY 201: HEAGRLSDQQ MALLQYQREN LHYLSEEILR LQESLSKYET NGSSTPQVDL AHLVATRDQE LRTLSAEVDQ LHSELNLARS LISERDREIQ HVRNTNNQYV 301: AENERLRAIL GEWSMRAAKL ERALEVERIS NIELRKKVSA LRDQRQVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)