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AT5G20500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.601
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23738689 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutaredoxin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic/virial (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G77370.1); Has 5770 Blast hits to 5765 proteins in 1222 species: Archae - 22; Bacteria - 2763; Metazoa - 448; Fungi - 348; Plants - 743; Viruses - 110; Other Eukaryotes - 1336 (source: NCBI BLink).
Protein Annotations
BioGrid:17448eggNOG:COG0695eggNOG:KOG1752EMBL:AF296833EMBL:AJ271472EMBL:AY084705EMBL:BT002005
EMBL:BT002008EMBL:BT025498EMBL:CP002688EnsemblPlants:AT5G20500EnsemblPlants:AT5G20500.1entrez:832172Gene3D:3.40.30.10
GeneID:832172Genevisible:Q8LFQ6GO:GO:0005773GO:GO:0005783GO:GO:0005794GO:GO:0009055GO:GO:0015035
GO:GO:0045454Gramene:AT5G20500.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF112HOGENOM:HOG000095204InParanoid:Q8LFQ6InterPro:IPR002109
InterPro:IPR011767InterPro:IPR011899InterPro:IPR012336InterPro:IPR014025KEGG:ath:AT5G20500KO:K03676OMA:DSTHAQF
PaxDb:Q8LFQ6Pfam:PF00462Pfam:Q8LFQ6Pfscan:PS51354PhylomeDB:Q8LFQ6PRIDE:Q8LFQ6PRINTS:PR00160
PRO:PR:Q8LFQ6PROSITE:PS00195PROSITE:PS51354ProteinModelPortal:Q8LFQ6Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_197550.1
scanprosite:PS00195SMR:Q8LFQ6STRING:3702.AT5G20500.1SUPFAM:SSF52833TAIR:AT5G20500TIGRfam:TIGR02180TIGRFAMs:TIGR02180
TMHMM:TMhelixUniGene:At.68535UniGene:At.837UniProt:Q8LFQ6
Coordinates (TAIR10) chr5:+:6938652..6939665
Molecular Weight (calculated) 14827.90 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.08
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMFRSISMV MLLVALVTFI SMVSSAASSP EADFVKKTIS SHKIVIFSKS YCPYCKKAKS VFRELDQVPY VVELDEREDG WSIQTALGEI VGRRTVPQVF
101: INGKHLGGSD DTVDAYESGE LAKLLGVSGN KEAEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)