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AT5G20280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.942
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sucrose phosphate synthase 1F
Curator
Summary (TAIR10)
Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.
Computational
Description (TAIR10)
sucrose phosphate synthase 1F (SPS1F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 2F (TAIR:AT5G11110.1); Has 9301 Blast hits to 9184 proteins in 1618 species: Archae - 405; Bacteria - 6026; Metazoa - 10; Fungi - 80; Plants - 739; Viruses - 0; Other Eukaryotes - 2041 (source: NCBI BLink).
Protein Annotations
BioGrid:17426CAZy:GT4EC:2.4.1.14eggNOG:COG0438eggNOG:KOG0853EMBL:AF296825EMBL:AK230113
EMBL:AY039911EMBL:AY079334EMBL:CP002688EnsemblPlants:AT5G20280EnsemblPlants:AT5G20280.1entrez:832150ExpressionAtlas:Q94BT0
GeneID:832150Genevisible:Q94BT0GO:GO:0005829GO:GO:0005886GO:GO:0005986GO:GO:0009506GO:GO:0016157
GO:GO:0046524GO:GO:0071836Gramene:AT5G20280.1gramene_pathway:2.4.1.14gramene_pathway:PWYQT-4467gramene_pathway:SUCSYN-PWYgramene_plant_reactome:1119465
gramene_plant_reactome:6876367hmmpanther:PTHR12526hmmpanther:PTHR12526:SF343HOGENOM:HOG000009685InParanoid:Q94BT0IntAct:Q94BT0InterPro:IPR000368
InterPro:IPR001296InterPro:IPR006380InterPro:IPR012819iPTMnet:Q94BT0KEGG:00500+2.4.1.14KEGG:ath:AT5G20280KO:K00696
ncoils:CoilOMA:KTWVRTAPaxDb:Q94BT0Pfam:PF00534Pfam:PF00862Pfam:PF05116Pfam:Q94BT0
PhylomeDB:Q94BT0PRIDE:Q94BT0PRO:PR:Q94BT0ProteinModelPortal:Q94BT0ProteinModelPortal:W8PUZ7Proteomes:UP000006548RefSeq:NP_197528.1
SMR:Q94BT0STRING:3702.AT5G20280.1SUPFAM:SSF53756TAIR:AT5G20280tair10-symbols:ATSPS1Ftair10-symbols:SPS1FTIGRfam:TIGR02468
TIGRFAMs:TIGR02468UniGene:At.22681UniPathway:UPA00371UniProt:Q94BT0UniProt:W8PUZ7
Coordinates (TAIR10) chr5:-:6844994..6849997
Molecular Weight (calculated) 117328.00 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.47
Length 1043 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)