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AT5G20270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.542
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heptahelical transmembrane protein1
Curator
Summary (TAIR10)
heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
Computational
Description (TAIR10)
heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
BioGrid:17425eggNOG:COG1272eggNOG:KOG0748EMBL:AF296825EMBL:AK226838EMBL:AY057524EMBL:AY086377
EMBL:AY143975EMBL:CP002688EnsemblPlants:AT5G20270EnsemblPlants:AT5G20270.1entrez:832149GeneID:832149Genevisible:Q93ZH9
GO:GO:0004872GO:GO:0009651GO:GO:0009725GO:GO:0009744GO:GO:0009788GO:GO:0016021Gramene:AT5G20270.1
hmmpanther:PTHR20855hmmpanther:PTHR20855:SF32HOGENOM:HOG000197115InParanoid:Q93ZH9InterPro:IPR004254KEGG:ath:AT5G20270KO:K07297
OMA:ITIMIITPANTHER:PTHR20855PaxDb:Q93ZH9Pfam:PF03006Pfam:Q93ZH9PhylomeDB:Q93ZH9PRO:PR:Q93ZH9
ProteinModelPortal:Q93ZH9Proteomes:UP000006548RefSeq:NP_197527.1SMR:Q93ZH9STRING:3702.AT5G20270.1TAIR:AT5G20270tair10-symbols:HHP1
TMHMM:TMhelixUniGene:At.26693UniProt:Q93ZH9
Coordinates (TAIR10) chr5:-:6841025..6842656
Molecular Weight (calculated) 37879.00 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.18
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQNGHNDEA ETVSCGNGNC KSKIVPGDDH GGDESSGTKR RKKRKTQQKT MKRRELMSYC ELPEYMKDNE YILNYYRADW SIRDAFFSVF SFHNESLNVW
101: THLIGFIFFV ALTVANIIHH DGFFPVDAKS PGNVTRWPFF VFLGGSMFCL LASSICHLFC CHSKELNVFL LRIDYAGITA MIITSFFPPI FYIFQCTPRW
201: YFIYLAGITS MGIFTIITLF TPSLSAPKYR AFRALLFASM GLFGIVPAAH ALVVNWGNPQ RNVTLVYELL MAVFYLVGTG FYVGRVPERL KPGWFDRVGH
301: SHQIFHVFVL LGALSHYAAA LLFLDWRDHV GC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)