AT5G20220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6822208..6825771 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44112.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKKKTRFQF LLNPNSKFVF FPRAISSSSS SSSDNNNDGS VSSSRQNNRQ MGYDPSEELF GVDFKPRFIS GDSREPRSWF GPNGQYIREL PCPTCRGRGY 101: TSCSNCGIER SRLDCPQCKG KGIMTCLRCL GDCVIWEESI DERPWEKARS SSPFRVKEDD EVDNLEIKFS KRRKSKRIYQ SPTPEVGQKI SRSLKSLNAK 201: TGLFSKRMKI IHRDPVLHAQ RVAAIKKAKG TPAARKHASE SMKAFFSNPV NREQRSLSMK GTKFYCKNCG QEGHRRHYCP ELGTNADRKF RCRGCGGKGH 301: NRRTCPKSKS IVTKGISTRY HKCGICGERG HNSRTCRKPT GVNPSCSGEN SGEDGVGKIT YACGFCKKMG HNVRTCPSKQ VSDSDSCLEQ EGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)