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AT5G20150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPX domain gene 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPX domain gene 1 (SPX1); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 2 (TAIR:AT2G26660.1); Has 1126 Blast hits to 1124 proteins in 197 species: Archae - 3; Bacteria - 7; Metazoa - 241; Fungi - 471; Plants - 313; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioGrid:17413DNASU:832137eggNOG:COG5036eggNOG:KOG1161EMBL:AF296825EMBL:AY075605EMBL:AY087206
EMBL:BT000868EMBL:CP002688EnsemblPlants:AT5G20150EnsemblPlants:AT5G20150.1entrez:832137GeneID:832137Genevisible:Q8LBH4
GO:GO:0005634GO:GO:0005783GO:GO:0016036GO:GO:0080040Gramene:AT5G20150.1hmmpanther:PTHR10783hmmpanther:PTHR10783:SF44
HOGENOM:HOG000238887InParanoid:Q8LBH4IntAct:Q8LBH4InterPro:IPR004331InterPro:IPR031142KEGG:ath:AT5G20150ncoils:Coil
OMA:NGLDETWPANTHER:PTHR10783:SF44PaxDb:Q8LBH4Pfam:PF03105Pfam:Q8LBH4Pfscan:PS51382PRIDE:Q8LBH4
PRO:PR:Q8LBH4PROSITE:PS51382ProteinModelPortal:Q8LBH4Proteomes:UP000006548RefSeq:NP_197515.1STRING:3702.AT5G20150.1TAIR:AT5G20150
tair10-symbols:ATSPX1tair10-symbols:SPX1UniGene:At.19659UniProt:Q8LBH4
Coordinates (TAIR10) chr5:+:6802429..6803367
Molecular Weight (calculated) 30074.80 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.43
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFGKSLSNQ IEQTLPEWQD KFLSYKELKK RLKLIGSKTA DRPVKRLRLD EFSVGISKEE INFIQLLEDE LEKFNNFFVE KEEEYIIRLK EFRDRIAKAK
101: DSMEKMIKIR KEIVDFHGEM VLLENYSALN YTGLVKILKK YDKRTGDLMR LPFIQKVLQQ PFYTTDLLFK LVKESEAMLD QIFPANETES EIIQAELSEH
201: KFMESLHMKS TIAALRVLKE IRSGSSTVSV FSLPPLQLNG LDETWKKIPL LEQEAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)