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AT5G20040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isopentenyltransferase 9
Curator
Summary (TAIR10)
Encodes tRNA isopentenyltransferase AtIPT9.
Computational
Description (TAIR10)
isopentenyltransferase 9 (IPT9); FUNCTIONS IN: tRNA dimethylallyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 8435 Blast hits to 8424 proteins in 2622 species: Archae - 0; Bacteria - 5395; Metazoa - 110; Fungi - 129; Plants - 270; Viruses - 0; Other Eukaryotes - 2531 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20040-MONOMERBioCyc:ARA:GQT-1435-MONOMERBioCyc:ARA:GQT-2636-MONOMEREC:2.5.1.75
eggNOG:COG0324eggNOG:KOG1384EMBL:AB062615EMBL:AF296836
EMBL:AF360208EMBL:AY040056EMBL:AY085878EMBL:CP002688
EnsemblPlants:AT5G20040EnsemblPlants:AT5G20040.1entrez:832126ExpressionAtlas:Q9C5J6
Gene3D:3.40.50.300GeneID:832126Genevisible:Q9C5J6GO:GO:0005524
GO:GO:0005737GO:GO:0008033GO:GO:0009691GO:GO:0052381
HAMAP:MF_00185hmmpanther:PTHR11088hmmpanther:PTHR11088:SF31HOGENOM:HOG000039995
InParanoid:Q9C5J6InterPro:IPR018022InterPro:IPR027417KEGG:00908+2.5.1.75
PaxDb:Q9C5J6Pfam:PF01715Pfam:Q9C5J6PhylomeDB:Q9C5J6
PRIDE:Q9C5J6PRO:PR:Q9C5J6ProteinModelPortal:Q9C5J6Proteomes:UP000006548
RefSeq:NP_568390.2RefSeq:NP_851043.1SMR:Q9C5J6STRING:3702.AT5G20040.3
SUPFAM:SSF52540TAIR:AT5G20040tair10-symbols:ATIPT9tair10-symbols:IPT9
TIGRfam:TIGR00174TIGRFAMs:TIGR00174UniGene:At.19013UniProt:Q9C5J6
Coordinates (TAIR10) chr5:-:6767939..6770980
Molecular Weight (calculated) 52267.10 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.39
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIGSGVFLT RTCYLRLQPP SLVLRRRFCA ATTACSVPLN GNKKKKSEKE KVIVISGPTG AGKSRLAMEL AKRLNGEIIS ADSVQVYKGL DVGSAKPSDS
101: DRKVVPHHLI DILHPSQDYS VGQFYDDGRQ ATKDILNRGR VPIVTGGTGL YLRWFMYGKP DVPKPSPEVI AEAHDMLVGF QTEYNWDAAV ELVVNAGDPK
201: ASSLPRNDWY RLRRSLEILK STGSPPSSFR IPYDSFRVNL VAPDADDFLE DGSSADISIQ NIETDLDYDF LCFFLSSPRV ALYRSIDFRC EDMLSGPNGV
301: LSEARWLLDL GLLPNSNPAT RAIGYRQAME YLLQCRRYEG ESSPREFYAF LNKFQTASRN FAKRQMTWFR CEPMYHWLNA SKPLDSILQC IYDAYESEAE
401: MVEIPESLRM SKDVRDSREA SELKGYRSKN RHFVRREDCS SVLEWIRSEG CKSEASCVES AIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)