suba logo
AT5G20030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.824
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant Tudor-like RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YF3TeggNOG:KOG4675EMBL:AY085260EMBL:BT003138
EMBL:CP002688EnsemblPlants:AT5G20030EnsemblPlants:AT5G20030.1entrez:832125
GeneID:832125Gramene:AT5G20030.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF5
HOGENOM:HOG000238892IntAct:Q8LES5InterPro:IPR005491InterPro:IPR008395
InterPro:IPR014002KEGG:ath:AT5G20030OMA:FDSYAWKPfam:PF03735
Pfam:PF05641Pfscan:PS51138PhylomeDB:Q8LES5PROSITE:PS51138
Proteomes:UP000006548RefSeq:NP_197503.1SMART:SM00743SMART:SM01191
SMR:Q8LES5STRING:3702.AT5G20030.1SUPFAM:0053920SUPFAM:SSF158639
TAIR:AT5G20030UniGene:At.31229UniProt:Q8LES5
Coordinates (TAIR10) chr5:-:6764971..6766036
Molecular Weight (calculated) 36640.30 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.58
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFNKGTKVE VLSKSSVPSG AWRSAEIISG NGHYYTVMYD HNDGTERVPR KSMRPEPPRL QVLDAWCPGD ILEVFQSCSW KMAIVSKVLG NGCFLVRLLG
101: SSLKFKVTKS DIRVRQSWQD NEWIMIGQGT SRLSAQTSTG ELRRKVNPKG DYISSESKDK LDESDVPLSV GLKKRTYSLV EPHNQTRALA AYPPRFREEV
201: KEEEEDRESV ASSVGSCCMD TDGLSAVSFN PIETGNSSDT ESSSCGYGKV KKLVVPRKGS EAADVHRLEL DAYRSSIERL HASGPIITWE QETWITNLRL
301: KLNISNEEHL MQIRNLISDD NSTIYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)