AT5G19870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.914 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF716) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF716) ; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6716182..6717012 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31639.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.55 | ||||||||||||||||||||||||||||
| Length | 276 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTLVGHILP GFFFFALGLW HLFNHIKIFS LHPKSYIAPL WFPLSKPRYL EPLVIIIASS LSISVELFLG QKNHQPFDPN DGTIPSNHLH NFEHSCISFT 101: FITYAAFAIV FDKTRPIAHR SLINLIAALA FAQQLFLFHF HSSDHTGVEG HYHLLLQLVV FVSLVTTLLG IALPSSFILS FVRSLSVSFQ GIWLMSMACM 201: LWTPSLVPKD CFLHIEEGKH TIRCSDVKAL HRAISLVNIQ FSWFLVIITI FAMWFYIFLQ RIYGEKIEYS QLRTKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)