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AT5G19855.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperonin-like RbcX protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperonin-like RbcX protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin-like RbcX (InterPro:IPR003435); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVZZeggNOG:ENOG4111VPFEMBL:AY088169EMBL:BT004014EMBL:BT005149EMBL:CP002688EnsemblPlants:AT5G19855
EnsemblPlants:AT5G19855.1entrez:832106GeneID:832106GO:GO:0009570GO:GO:0044183GO:GO:0061077Gramene:AT5G19855.1
hmmpanther:PTHR33791hmmpanther:PTHR33791:SF4HOGENOM:HOG000240504InterPro:IPR003435KEGG:ath:AT5G19855OMA:LCLDAHTPDB:4GR6
PDBsum:4GR6Pfam:PF02341PhylomeDB:Q8L9X2Proteomes:UP000006548RefSeq:NP_568382.1SMR:Q8L9X2STRING:3702.AT5G19855.1
SUPFAM:SSF158615TAIR:AT5G19855UniGene:At.31246UniProt:Q8L9X2
Coordinates (TAIR10) chr5:-:6712166..6713445
Molecular Weight (calculated) 23477.40 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.45
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSAWFVVGS PVMDSSSSPC LCLDAHTTGT IRRKKILGKA RNLELGSSFT GSRIVFRLSP KRVSRIANRK SKKLLIVNED VAGNYDDTFG DVQKQIVNYF
101: TYKAVRTVLH QLYEMNPPQY TWFYNHIITN RPTDGKRFLR ALGKESQELA ERVMITRLHL YGKWIKKCDH GKIYQEISDE NLALMRERLM ETVIWPSDDT
201: NSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)