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AT5G19850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG1454EMBL:CP002688EnsemblPlants:AT5G19850EnsemblPlants:AT5G19850.1entrez:832105Gene3D:3.40.50.1820
GeneID:832105GO:GO:0016787Gramene:AT5G19850.1gramene_pathway:3.1.1.3gramene_pathway:LIPAS-PWYhmmpanther:PTHR10992hmmpanther:PTHR10992:SF351
InParanoid:F4K2M9InterPro:IPR000073InterPro:IPR029058KEGG:ath:AT5G19850MEROPS:S33.A03OMA:LNCSLRLPaxDb:F4K2M9
Pfam:PF12697PRIDE:F4K2M9PRINTS:PR00111ProteinModelPortal:F4K2M9Proteomes:UP000006548RefSeq:NP_568381.1SMR:F4K2M9
STRING:3702.AT5G19850.1SUPFAM:SSF53474TAIR:AT5G19850UniGene:At.31247UniGene:At.66697UniProt:F4K2M9
Coordinates (TAIR10) chr5:-:6709976..6711662
Molecular Weight (calculated) 40107.30 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.04
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTSIFAAL PFTNFEFPSL FRVKNSSIIS FSETHFLRQS ISTAIVRSPT KRGIVSVSCS SVTDEASSEE LQVRTLTWKW KGYSIRYQCA GTSGPALVLV
101: HGFGANSDHW RKNTPILGKT HRVYSIDLIG YGYSDKPNPR EFGGEPFYTF ETWGEQLNDF CLDVVKDEAF FICNSIGGLV GLQAAVSKPE ICRGLMLINI
201: SLRMLHIKKQ PFIGRPFIKS FQNLLRNTPV GKLFFKSIAK PETVKSILCQ CYHDSSQVTD ELVEAILRPG LEPGAVDVFL EFICYSGGPL PEDLLPLVKC
301: PVLIAWGEKD PWEPIELGRA YSNFDAVEDF VVLPDAGHCP QDEKPEMVNP LIESFVARH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)