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AT5G19790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : related to AP2 11
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
related to AP2 11 (RAP2.11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root hair, epidermis, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17375eggNOG:ENOG410IY3KeggNOG:ENOG410YYMHEMBL:AF003104EMBL:AF296838EMBL:AY560854EMBL:CP002688
EnsemblPlants:AT5G19790EnsemblPlants:AT5G19790.1entrez:832099Gene3D:3.30.730.10GeneID:832099Genevisible:Q6J9S1GO:GO:0000302
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009723GO:GO:0009873GO:GO:0035865GO:GO:0043565
GO:GO:0048528Gramene:AT5G19790.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF5HOGENOM:HOG000242199InParanoid:Q6J9S1InterPro:IPR001471
InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT5G19790KO:K09286ncoils:CoilOMA:NDHYSTDPANTHER:PTHR31194
PaxDb:Q6J9S1Pfam:PF00847Pfam:Q6J9S1Pfscan:PS51032PhylomeDB:Q6J9S1PRINTS:PR00367PRO:PR:Q6J9S1
PROSITE:PS51032ProteinModelPortal:Q6J9S1Proteomes:UP000006548RefSeq:NP_197480.1SMART:SM00380SMR:Q6J9S1STRING:3702.AT5G19790.1
SUPFAM:SSF54171TAIR:AT5G19790tair10-symbols:RAP2.11UniGene:At.49039UniGene:At.71012UniProt:Q6J9S1
Coordinates (TAIR10) chr5:-:6689271..6690032
Molecular Weight (calculated) 28376.20 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.71
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)