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AT5G19750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17666025 (2007): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT2G14860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SYHeggNOG:KOG1944EMBL:CP002688EnsemblPlants:AT5G19750EnsemblPlants:AT5G19750.1entrez:832095GeneID:832095
GO:GO:0009507GO:GO:0009941GO:GO:0016021Gramene:AT5G19750.1hmmpanther:PTHR11266hmmpanther:PTHR11266:SF40InParanoid:F4K2L8
InterPro:IPR007248KEGG:ath:AT5G19750KO:K13348OMA:WASHKEVPANTHER:PTHR11266PaxDb:F4K2L8Pfam:PF04117
PRIDE:F4K2L8ProteinModelPortal:F4K2L8Proteomes:UP000006548RefSeq:NP_197476.1STRING:3702.AT5G19750.1TAIR:AT5G19750TMHMM:TMhelix
UniGene:At.24857UniGene:At.49038UniProt:F4K2L8
Coordinates (TAIR10) chr5:+:6677124..6679127
Molecular Weight (calculated) 30370.80 Da
IEP (calculated) 10.90
GRAVY (calculated) 0.20
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNSITLTRK PPLPFNSVGF SGNHSSSFGR RTITEGSSSK ALSFGYKNVG SLKCGRSNWP GRSGTAFGHL VRVSAVPGGN SGGSGGLGGS GGGGGGSGGG
101: GGDGSDGKGK KWSLLSWYQA LLSNSPVLTK AVTAALLNLV GDLICQLTIN KTSSLDKKRT LTFTFLGLGL VGPTLHFWYL YLSKVVTASG LSGAVIRLLL
201: DQFVFAPIFV GVFLSAVVTL EGKPSNVIPK LQQEWTGAMI ANWQLWIPFQ FLNFRFVPQN YQVLASNVVA LAWNVILSFK AHKEVVAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)