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AT5G19710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: HPT phosphotransmitter 4 (TAIR:AT3G16360.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2198eggNOG:KOG4747EMBL:CP002688EnsemblPlants:AT5G19710
EnsemblPlants:AT5G19710.1entrez:832091GeneID:832091GO:GO:0000160
GO:GO:0004871GO:GO:0005622Gramene:AT5G19710.1hmmpanther:PTHR28242
hmmpanther:PTHR28242:SF12InterPro:IPR008207KEGG:ath:AT5G19710OMA:QASYNIF
PaxDb:F4K2L3PhylomeDB:F4K2L3PRIDE:F4K2L3ProteinModelPortal:F4K2L3
Proteomes:UP000006548RefSeq:NP_197472.1SMR:F4K2L3STRING:3702.AT5G19710.1
SUPFAM:SSF47226TAIR:AT5G19710UniGene:At.54920UniProt:F4K2L3
Coordinates (TAIR10) chr5:-:6664745..6666107
Molecular Weight (calculated) 12865.50 Da
IEP (calculated) 10.38
GRAVY (calculated) -0.49
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIKSLHVQV EEMRQSFFDE GARANRGTHD YPMHSSARKQ QRQASYNIFV IIGAIKVVKE LKKANTFLKA GNIEGVKGAL PDIKKEHSEL RAKFETYFQL
101: MRQAGPTDVA VNSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)