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AT5G19680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G22320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0531EMBL:AK228123EMBL:BT003139
EMBL:CP002688EnsemblPlants:AT5G19680EnsemblPlants:AT5G19680.1entrez:832088
Gene3D:3.80.10.10GeneID:832088Gramene:AT5G19680.1hmmpanther:PTHR24365
HOGENOM:HOG000211189IntAct:Q84WJ9InterPro:IPR001611InterPro:IPR003591
InterPro:IPR025875InterPro:IPR032675KEGG:ath:AT5G19680KO:K17550
OMA:NLDHVKNPfam:PF12799Pfam:PF13516Pfscan:PS51450
PhylomeDB:Q84WJ9PROSITE:PS51450Proteomes:UP000006548RefSeq:NP_197469.1
SMART:SM00369SMR:Q84WJ9STRING:3702.AT5G19680.1SUPFAM:SSF52058
TAIR:AT5G19680UniGene:At.23794UniProt:Q84WJ9
Coordinates (TAIR10) chr5:+:6649663..6651564
Molecular Weight (calculated) 36987.20 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.22
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSEKEDEPL EEIGDSNNVL DLTSYQLHSL DTVELPPNLI ELDLTANRLS GLDSRIAQLS TLKKLSLRQN LIDDSAVEPL SHWDALSDLE ELVLRDNKLA
101: KVPDVSIFTK LLVYDISFNE ITSLEGISKA SSTLKELYVS KNEVNKIMEI EHLHNLQILE LGSNRLRVME NLENFTKLEE LWLGRNRIKV VNLCGLKCIK
201: KISLQSNRLT SMKGFEECVA LEELYLSHNG ISKMEGLSAL VNLRVLDVSN NKLTSVDDIQ NLTKLEDLWL NDNQIESLEA ITEAVTGSKE KLTTIYLENN
301: PCAKSSDYVA AVRQIFPNVE QIDSNLFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)