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AT5G19530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.
Computational
Description (TAIR10)
ACAULIS 5 (ACL5); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-409-MONOMERBioCyc:MetaCyc:MONOMER-15365BRENDA:2.5.1.79EC:2.5.1.79eggNOG:COG0421eggNOG:KOG1562EMBL:AB076723
EMBL:AB076724EMBL:AB076725EMBL:AB076726EMBL:AB076727EMBL:AB076728EMBL:AB076729EMBL:AB076730
EMBL:AB076731EMBL:AB076732EMBL:AB076733EMBL:AB076734EMBL:AB076735EMBL:AB076736EMBL:AB076737
EMBL:AB076738EMBL:AB076739EMBL:AB076740EMBL:AB076741EMBL:AB076742EMBL:AB076743EMBL:AF184093
EMBL:AF184094EMBL:AF296830EMBL:AK318985EMBL:AY087927EMBL:AY127003EMBL:BT002254EMBL:CP002688
EnsemblPlants:AT5G19530EnsemblPlants:AT5G19530.1entrez:832073Gene3D:3.40.50.150GeneID:832073Genevisible:Q9S7X6GO:GO:0005737
GO:GO:0006596GO:GO:0009926GO:GO:0010087GO:GO:0010487GO:GO:0016768GO:GO:0048759gramene_pathway:2.5.1.22
gramene_pathway:ARGSPECAT-PWYHAMAP:MF_00198hmmpanther:PTHR11558hmmpanther:PTHR11558:SF26InParanoid:Q9S7X6InterPro:IPR001045InterPro:IPR029063
InterPro:IPR030374iPTMnet:Q9S7X6KEGG:00270+2.5.1.16KEGG:00330+2.5.1.16KEGG:00410+2.5.1.16KEGG:00480+2.5.1.16KEGG:ath:AT5G19530
KO:K18787ncoils:CoilOMA:WINEYITPaxDb:Q9S7X6Pfam:PF01564Pfam:Q9S7X6Pfscan:PS51006
PhylomeDB:Q9S7X6PRIDE:Q9S7X6PRO:PR:Q9S7X6PROSITE:PS51006ProteinModelPortal:Q9S7X6Proteomes:UP000006548RefSeq:NP_001078605.1
RefSeq:NP_568376.1SMR:Q9S7X6STRING:3702.AT5G19530.1SUPFAM:SSF53335TAIR:AT5G19530tair10-symbols:ACL5UniGene:At.11696
unipathway:UPA00248UniProt:Q9S7X6
Coordinates (TAIR10) chr5:-:6589176..6591091
Molecular Weight (calculated) 38548.80 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.29
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEAVEVMFG NGFPEIHKAT SPTQTLHSNQ QDCHWYEETI DDDLKWSFAL NSVLHQGTSE YQDIALLDTK RFGKVLVIDG KMQSAERDEF IYHECLIHPA
101: LLFHPNPKTV FIMGGGEGSA AREILKHTTI EKVVMCDIDQ EVVDFCRRFL TVNSDAFCNK KLELVIKDAK AELEKREEKF DIIVGDLADP VEGGPCYQLY
201: TKSFYQNILK PKLSPNGIFV TQAGPAGIFT HKEVFTSIYN TMKQVFKYVK AYTAHVPSFA DTWGWVMASD HEFDVEVDEM DRRIEERVNG ELMYLNAPSF
301: VSAATLNKTI SLALEKETEV YSEENARFIH GHGVAYRHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)