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AT5G19520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.976
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mechanosensitive channel of small conductance-like 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mechanosensitive channel of small conductance-like 9 (MSL9); CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 10 (TAIR:AT5G12080.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17348eggNOG:COG0668eggNOG:KOG4629EMBL:AF296830EMBL:AK228195EMBL:BT006457EMBL:CP002688
EnsemblPlants:AT5G19520EnsemblPlants:AT5G19520.1entrez:832072GeneID:832072Genevisible:Q84M97GO:GO:0005634GO:GO:0005886
GO:GO:0006820GO:GO:0008381GO:GO:0016021GO:GO:0034220GO:GO:0050982GO:GO:0080167Gramene:AT5G19520.1
hmmpanther:PTHR31618hmmpanther:PTHR31618:SF3HOGENOM:HOG000239334InParanoid:Q84M97InterPro:IPR006685InterPro:IPR010920InterPro:IPR016688
iPTMnet:Q84M97KEGG:ath:AT5G19520ncoils:CoilOMA:VLIAWICPaxDb:Q84M97Pfam:PF00924Pfam:Q84M97
PhylomeDB:Q84M97PIRSF:PIRSF017209PRIDE:Q84M97PRO:PR:Q84M97ProteinModelPortal:Q84M97Proteomes:UP000006548RefSeq:NP_197453.1
STRING:3702.AT5G19520.1SUPFAM:SSF50182TAIR:AT5G19520tair10-symbols:ATMSL9tair10-symbols:MSL9TMHMM:TMhelixUniGene:At.22704
UniProt:Q84M97
Coordinates (TAIR10) chr5:+:6586079..6588771
Molecular Weight (calculated) 84253.70 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.03
Length 742 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERRVSNGE EVVINVSDKE DSKDPRASPS FNPLASPDSD AGIEKSKPVP PISIPTPEIY KFSGSVHKPP KIPSPEGLVR RKSLSRSIYS KPKSRFGEQQ
101: SFRYDSTREE NGGRSLREQF GAGSFARGSF DRASPNNKSN RSVASAALSK VAEEEPDENE EIYKKVKLHR VKRSGMKPLA FLELVVFMAI LGALIVSLTI
201: DVVNKHTIWG LEFWKWCVLV MVTLSGMLVT NWFMHFVVFI IEKNYLLRKK VLYFVHGLKK NVQVFIWFSL VLIAWICLFD GDVKRTRKTK RFLDFITWTI
301: VSLLVGSILF LVKTFALKVL ASKFNVRNFF ERIQESVFHQ YVLQTLSGPP LIEEAENVGR VPSTGHLSFT RTKDGKVKDK KVIDMGKVHR MKQEKVSAWT
401: MRVLIEAVGT SGISTISSTL DEVNNKKERT DKEITNEMEA VAAAYDVFNN VAKPNHNYIE EDDLLRFMIK EEVDLVLPLI EDADTGKITR KTFTEWVVNV
501: YTSRKTIGHS LNDTKTAVKQ LDKLITGILT VITFIVWMVL LDIASTKLLL VFSSQFLGLA FMIGSTCKNI FESFMFVFVM HPYDVGDRCV VDGVMLLVEE
601: IDLLTTVFLK IDNEKVFYPN SVLISKPISN FYRSPDMGDY VDFGIAFSTP AEKIGCLKGK IGEYLVANSQ HWYPEAQVMV RAIENMNKLV LNILVQHTIN
701: FQVYVEKSLR RTALIIAIKR ILEDLEIDYT LLPQDVNLTG HK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)