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AT5G19350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G11650.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AF296837EMBL:AY074319EMBL:AY114004EMBL:CP002688EnsemblPlants:AT5G19350
EnsemblPlants:AT5G19350.1entrez:832055ExpressionAtlas:Q8VXZ9Gene3D:3.30.70.330GeneID:832055Genevisible:Q8VXZ9GO:GO:0000166
GO:GO:0005634GO:GO:0006397GO:GO:0008143GO:GO:0010494GO:GO:0034605hmmpanther:PTHR24012hmmpanther:PTHR24012:SF333
HOGENOM:HOG000186228InterPro:IPR000504InterPro:IPR012677iPTMnet:Q8VXZ9KEGG:ath:AT5G19350OMA:TQADPNQPaxDb:Q8VXZ9
Pfam:PF00076Pfam:Q8VXZ9Pfscan:PS50102PhylomeDB:Q8VXZ9PRIDE:Q8VXZ9PRO:PR:Q8VXZ9PROSITE:PS50102
ProteinModelPortal:Q8VXZ9Proteomes:UP000006548RefSeq:NP_001078604.1RefSeq:NP_197436.1SMART:SM00360SMR:Q8VXZ9STRING:3702.AT5G19350.1
SUPFAM:SSF54928TAIR:AT5G19350UniGene:At.31302UniProt:Q8VXZ9
Coordinates (TAIR10) chr5:+:6518978..6521295
Molecular Weight (calculated) 46599.40 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.46
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)