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AT5G19250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.957
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
EpiLoc: golgiiPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgi
MultiLoc: extracellularPlant-mPloc: plasma membranePredotar: endoplasmic reticulumPredotar: extracellular
Predotar: golgiPredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgi
PProwler: endoplasmic reticulumPProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulum
SLPFA: extracellularSLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellular
SLP-Local: golgiSubLoc: extracellularTargetP: endoplasmic reticulumTargetP: extracellular
TargetP: golgiWoLF PSORT: extracellularYLoc: extracellular
 AmiGO : plasma membrane 12805588
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycoprotein membrane precursor GPI-anchored
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT3G06035.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY5PeggNOG:ENOG410YJI0EMBL:AC069326EMBL:AK176065
EMBL:BT014784EMBL:BT015011EMBL:CP002688EnsemblPlants:AT5G19250
EnsemblPlants:AT5G19250.1entrez:832045GeneID:832045Genevisible:P59833
GO:GO:0031225GO:GO:0046658Gramene:AT5G19250.1hmmpanther:PTHR33976
hmmpanther:PTHR33976:SF1HOGENOM:HOG000242485InParanoid:P59833KEGG:ath:AT5G19250
OMA:CLADEMAPaxDb:P59833Pfam:P59833PhylomeDB:P59833
PRIDE:P59833PRO:PR:P59833Proteomes:UP000006548RefSeq:NP_197426.1
STRING:3702.AT5G19250.1TAIR:AT5G19250TMHMM:TMhelixUniGene:At.24816
UniProt:P59833
Coordinates (TAIR10) chr5:+:6471983..6472808
Molecular Weight (calculated) 21028.10 Da
IEP (calculated) 4.46
GRAVY (calculated) 0.26
Length 196 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAISKLHLLF LLSVFLSLHP LVLSDTADEE DVLLTGINSY RASLNLTTLI HNHNAECLAD EIADQFKNQP CTNTTGSASV PGTTPGFPNL PNLLSKCRLN
101: PTVTRDGAIL PACVPNLDPS LVLTNFTMSQ YSKDLNDSKF TGIGIGSDDN WIVVVLTTST PEGSYSPASN SGAFAFGVNG LVSSSLMFLL FCFFMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)