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AT5G19240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycoprotein membrane precursor GPI-anchored
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT5G19230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AC069326EMBL:AF083770EMBL:BT004589EMBL:CP002688EnsemblPlants:AT5G19240EnsemblPlants:AT5G19240.1entrez:832044
GeneID:832044Genevisible:Q84VZ5GO:GO:0005886GO:GO:0031225Gramene:AT5G19240.1hmmpanther:PTHR33976hmmpanther:PTHR33976:SF1
HOGENOM:HOG000242485InParanoid:Q84VZ5KEGG:ath:AT5G19240PaxDb:Q84VZ5Pfam:Q84VZ5PRIDE:Q84VZ5PRO:PR:Q84VZ5
Proteomes:UP000006548RefSeq:NP_197425.1STRING:3702.AT5G19240.1TAIR:AT5G19240UniGene:At.19768UniProt:Q84VZ5
Coordinates (TAIR10) chr5:+:6470209..6470981
Molecular Weight (calculated) 21336.40 Da
IEP (calculated) 7.11
GRAVY (calculated) 0.08
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISKLHLVL FLLSVFLSLH RPVLSNTDGE NLLFTVFNQY RESVNLTNLK KNKNAECLAD EVVDQLQNQP CTNTTGSASV PGTDPGIPNF PNLLAKCRLN
101: TNVTRDGLIL QVCAPKHHST PDLSSFANVL TKNLNDSKFT GAGVGIDSDG IWLVTVLTTN TPGGSYSNSG AFAFGVNGLV SSSLMFLHVL SHNSLSLFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)