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AT5G19150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17311EC:4.2.1.93eggNOG:COG0063eggNOG:KOG3974EMBL:AC069326EMBL:AY048225EMBL:AY101541
EMBL:CP002688EnsemblPlants:AT5G19150EnsemblPlants:AT5G19150.1EnsemblPlants:AT5G19150.2entrez:832035Gene3D:3.40.1190.20GeneID:832035
Genevisible:Q94AF2GO:GO:0005524GO:GO:0005739GO:GO:0005829GO:GO:0006734GO:GO:0006739GO:GO:0009507
GO:GO:0047453GO:GO:0052855GO:GO:0052856GO:GO:0052857Gramene:AT5G19150.1Gramene:AT5G19150.2HAMAP:MF_01965
hmmpanther:PTHR12592hmmpanther:PTHR12592:SF0HOGENOM:HOG000163126InParanoid:Q94AF2IntAct:Q94AF2InterPro:IPR000631InterPro:IPR029056
KEGG:ath:AT5G19150KO:K17757OMA:VICERSAPaxDb:Q94AF2Pfam:PF01256Pfam:Q94AF2Pfscan:PS51383
PhylomeDB:Q94AF2PRIDE:Q94AF2PRO:PR:Q94AF2PROSITE:PS51383ProteinModelPortal:Q94AF2Proteomes:UP000006548RefSeq:NP_568369.1
RefSeq:NP_974811.1SMR:Q94AF2STRING:3702.AT5G19150.1SUPFAM:SSF53613TAIR:AT5G19150TIGRfam:TIGR00196TIGRFAMs:TIGR00196
UniGene:At.22240UniGene:At.26189UniGene:At.65839UniProt:Q94AF2
Coordinates (TAIR10) chr5:-:6426280..6428402
Molecular Weight (calculated) 39271.50 Da
IEP (calculated) 7.04
GRAVY (calculated) 0.04
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)