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AT5G19030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G20030.1); Has 18468 Blast hits to 14051 proteins in 762 species: Archae - 10; Bacteria - 1205; Metazoa - 9569; Fungi - 2141; Plants - 3708; Viruses - 0; Other Eukaryotes - 1835 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:CP002688EnsemblPlants:AT5G19030
EnsemblPlants:AT5G19030.1entrez:832022ExpressionAtlas:F4JZK9Gene3D:3.30.70.330
GeneID:832022GO:GO:0000166GO:GO:0003676Gramene:AT5G19030.1
hmmpanther:PTHR24012InParanoid:F4JZK9InterPro:IPR000504InterPro:IPR003954
InterPro:IPR012677KEGG:ath:AT5G19030OMA:RFILVKFPaxDb:F4JZK9
Pfam:PF00076Pfscan:PS50102PhylomeDB:F4JZK9PRIDE:F4JZK9
PROSITE:PS50102ProteinModelPortal:F4JZK9Proteomes:UP000006548RefSeq:NP_197404.2
SMART:SM00360SMART:SM00361SMR:F4JZK9STRING:3702.AT5G19030.1
SUPFAM:SSF54928TAIR:AT5G19030UniGene:At.31343UniProt:F4JZK9
Coordinates (TAIR10) chr5:-:6357503..6359081
Molecular Weight (calculated) 19389.20 Da
IEP (calculated) 10.83
GRAVY (calculated) -0.29
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSSTFQI PFLKHRYFGM SQNLRTPILT MSTIPRDRLI SSFHTARSKL CSPLRTISCV AGDDETREAS SLPSSISSLF VKGFSDSVSE GRLKKVFSEF
101: GQVTNVKIIA NERTRQSLGY GYVWFNSKED AQSAVEAMNG KFFDGRFILV KFGQPGLSRR RRPHSDFLFV NK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)