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AT5G19000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BTB-POZ and MATH domain 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
BioGrid:17294EMBL:AC068809EMBL:AY136451EMBL:BT002593
EMBL:CP002688EnsemblPlants:AT5G19000EnsemblPlants:AT5G19000.1entrez:832018
Gene3D:2.60.210.10GeneID:832018Genevisible:Q8L765GO:GO:0005634
GO:GO:0016567GO:GO:0042802hmmpanther:PTHR24411hmmpanther:PTHR24411:SF35
HOGENOM:HOG000220921InParanoid:Q8L765IntAct:Q8L765InterPro:IPR000210
InterPro:IPR002083InterPro:IPR008974InterPro:IPR011333KEGG:ath:AT5G19000
KO:K10523MINT:MINT-7262818OMA:NMSQHIGPfam:PF00651
Pfam:Q8L765Pfscan:PS50097Pfscan:PS50144PhylomeDB:Q8L765
PRIDE:Q8L765PRO:PR:Q8L765PROSITE:PS50097PROSITE:PS50144
ProteinModelPortal:Q8L765Proteomes:UP000006548Reactome:R-ATH-5632684RefSeq:NP_001190334.1
RefSeq:NP_197401.2SMART:SM00061SMART:SM00225SMR:Q8L765
SUPFAM:SSF49599SUPFAM:SSF54695TAIR:AT5G19000tair10-symbols:ATBPM1
tair10-symbols:BPM1UniGene:At.20179UniPathway:UPA00143UniProt:Q8L765
Coordinates (TAIR10) chr5:+:6342563..6344641
Molecular Weight (calculated) 44731.50 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.07
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLLHF IYWDELPDMQ ELIGTDSTLA STLVAQHLLA AADRYALERL
301: KAICESKLCE GVAINTVATT LALAEQHHCL QLKAVCLKFV ALPENLKAVM QTDGFDYLKE SCPSLLTELL QYVARLSEHS VIVSGHRKEI FADGCDASGR
401: RVKPRLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)