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AT5G18960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.538
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAR1-related sequence 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAR1-related sequence 12 (FRS12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 7 (TAIR:AT3G06250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKWSeggNOG:ENOG4111ADBEMBL:AC068655EMBL:CP002688EnsemblPlants:AT5G18960EnsemblPlants:AT5G18960.1entrez:832014
GeneID:832014Genevisible:Q3E7I5GO:GO:0005634GO:GO:0006355GO:GO:0008270Gramene:AT5G18960.1hmmpanther:PTHR31669
hmmpanther:PTHR31669:SF38HOGENOM:HOG000112649InParanoid:Q3E7I5InterPro:IPR004330InterPro:IPR006564InterPro:IPR007527InterPro:IPR018289
InterPro:IPR031052KEGG:ath:AT5G18960ncoils:CoilOMA:DNGSCMSPANTHER:PTHR31669PaxDb:Q3E7I5Pfam:PF03101
Pfam:PF04434Pfam:PF10551Pfam:Q3E7I5Pfscan:PS50966PhylomeDB:Q3E7I5PRIDE:Q3E7I5PRO:PR:Q3E7I5
PROSITE:PS50966Proteomes:UP000006548RefSeq:NP_197397.1SMART:SM00575STRING:3702.AT5G18960.1TAIR:AT5G18960tair10-symbols:FRS12
UniGene:At.22319UniGene:At.72702UniProt:Q3E7I5
Coordinates (TAIR10) chr5:+:6330556..6333071
Molecular Weight (calculated) 90501.70 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.58
Length 788 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVDTELTS FNNMVAKSSY PVRILHHNNG ISEDEEGGSG VEPYVGLEFD TAEEAREFYN AYAARTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS
101: RTGCTAFIRV QRRDTGKWVL DQIQKEHNHE LGGEGSVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DRETRSCPGG FKRFKGGGGE GEVSDDHHQT
201: QQAKAVTGTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS REGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHDLE
301: PGKKNDAGMK KIPDDGTGGL DSVDLIELND FGNNHIKKTR ENRIGKEWYP LLLDYFQSRQ TEDMGFFYAV ELDVNNGSCM SIFWADSRAR FACSQFGDSV
401: VFDTSYRKGS YSVPFATIIG FNHHRQPVLL GCAMVADESK EAFLWLFQTW LRAMSGRRPR SIVADQDLPI QQALVQVFPG AHHRYSAWQI REKERENLIP
501: FPSEFKYEYE KCIYQTQTIV EFDSVWSALI NKYGLRDDVW LREIYEQREN WVPAYLRASF FAGIPINGTI EPFFGASLDA LTPLREFISR YEQALEQRRE
601: EERKEDFNSY NLQPFLQTKE PVEEQCRRLY TLTVFRIFQN ELVQSYNYLC LKTYEEGAIS RFLVRKCGNE SEKHAVTFSA SNLNSSCSCQ MFEHEGLLCR
701: HILKVFNLLD IRELPSRYIL HRWTKNAEFG FVRDMESGVS AQDLKALMVW SLREAASKYI EFGTSSLEKY KLAYEIMREG GKKLCWQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)