AT5G18960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 12 (FRS12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 7 (TAIR:AT3G06250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6330556..6333071 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90501.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 788 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESVDTELTS FNNMVAKSSY PVRILHHNNG ISEDEEGGSG VEPYVGLEFD TAEEAREFYN AYAARTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS 101: RTGCTAFIRV QRRDTGKWVL DQIQKEHNHE LGGEGSVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DRETRSCPGG FKRFKGGGGE GEVSDDHHQT 201: QQAKAVTGTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS REGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHDLE 301: PGKKNDAGMK KIPDDGTGGL DSVDLIELND FGNNHIKKTR ENRIGKEWYP LLLDYFQSRQ TEDMGFFYAV ELDVNNGSCM SIFWADSRAR FACSQFGDSV 401: VFDTSYRKGS YSVPFATIIG FNHHRQPVLL GCAMVADESK EAFLWLFQTW LRAMSGRRPR SIVADQDLPI QQALVQVFPG AHHRYSAWQI REKERENLIP 501: FPSEFKYEYE KCIYQTQTIV EFDSVWSALI NKYGLRDDVW LREIYEQREN WVPAYLRASF FAGIPINGTI EPFFGASLDA LTPLREFISR YEQALEQRRE 601: EERKEDFNSY NLQPFLQTKE PVEEQCRRLY TLTVFRIFQN ELVQSYNYLC LKTYEEGAIS RFLVRKCGNE SEKHAVTFSA SNLNSSCSCQ MFEHEGLLCR 701: HILKVFNLLD IRELPSRYIL HRWTKNAEFG FVRDMESGVS AQDLKALMVW SLREAASKYI EFGTSSLEKY KLAYEIMREG GKKLCWQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)