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AT5G18880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.680
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:CP002688EnsemblPlants:AT5G18880
EnsemblPlants:AT5G18880.1entrez:832006GeneID:832006GO:GO:0003964
Gramene:AT5G18880.1InParanoid:Q3E9D7InterPro:IPR026960KEGG:ath:AT5G18880
OMA:NGDETHAPaxDb:Q3E9D7Pfam:PF13966PhylomeDB:Q3E9D7
PRIDE:Q3E9D7Proteomes:UP000006548RefSeq:NP_197389.1STRING:3702.AT5G18880.1
TAIR:AT5G18880UniGene:At.65526UniProt:Q3E9D7
Coordinates (TAIR10) chr5:-:6300535..6301422
Molecular Weight (calculated) 33920.60 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.12
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQLKPSIVE FMRCDMGNGE SASFWYDAWT DFGQLLTFLG AAGPRQLRIR QDARVVEASR NGDWFLPAAR SDNSQLFLAA LTMAPVPHES RGQDSFLWRN
101: AAGSYLPSFS SRDTWEQIRV HSPTVPWAKV VWFKEYIPRF SLITWMSFLE RLPTRDRLRG WGMNIPSSWV LCSNGDETHA HLFFECSFSL AIWEFFASKF
201: RPSPPFGLPA ASSWILQLPL RSHSTTILKL LLQSAVYHVW KERNARIFTS ISSSASSLRL AIDRTMRNRL LSFPSADLRS PSLLQFYFSR FSYPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)